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  • Bug fixes for general core bugs in 4.3.x will end 7 October 2024 (12 months).
  • Bug fixes for security issues in 4.3.x will end 21 April 2025 (18 months).
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Defines 78 classes

Google_Service_Genomics:: (1 method):
  __construct()

Google_Service_Genomics_Callsets_Resource:: (5 methods):
  create()
  delete()
  get()
  patch()
  search()

Google_Service_Genomics_Datasets_Resource:: (9 methods):
  create()
  delete()
  get()
  getIamPolicy()
  listDatasets()
  patch()
  setIamPolicy()
  testIamPermissions()
  undelete()

Google_Service_Genomics_Operations_Resource:: (4 methods):
  cancel()
  delete()
  get()
  listOperations()

Google_Service_Genomics_Readgroupsets_Resource:: (6 methods):
  delete()
  export()
  get()
  import()
  patch()
  search()

Google_Service_Genomics_ReadgroupsetsCoveragebuckets_Resource:: (1 method):
  listReadgroupsetsCoveragebuckets()

Google_Service_Genomics_Reads_Resource:: (1 method):
  search()

Google_Service_Genomics_References_Resource:: (2 methods):
  get()
  search()

Google_Service_Genomics_ReferencesBases_Resource:: (1 method):
  listReferencesBases()

Google_Service_Genomics_Referencesets_Resource:: (2 methods):
  get()
  search()

Google_Service_Genomics_Variants_Resource:: (6 methods):
  create()
  delete()
  get()
  import()
  patch()
  search()

Google_Service_Genomics_Variantsets_Resource:: (6 methods):
  create()
  delete()
  export()
  get()
  patch()
  search()

Google_Service_Genomics_Binding:: (4 methods):
  setMembers()
  getMembers()
  setRole()
  getRole()

Google_Service_Genomics_CallSet:: (12 methods):
  setCreated()
  getCreated()
  setId()
  getId()
  setInfo()
  getInfo()
  setName()
  getName()
  setSampleId()
  getSampleId()
  setVariantSetIds()
  getVariantSetIds()

Google_Service_Genomics_CallSetInfo:: (0 methods):

Google_Service_Genomics_CancelOperationRequest:: (0 methods):

Google_Service_Genomics_CigarUnit:: (6 methods):
  setOperation()
  getOperation()
  setOperationLength()
  getOperationLength()
  setReferenceSequence()
  getReferenceSequence()

Google_Service_Genomics_CoverageBucket:: (4 methods):
  setMeanCoverage()
  getMeanCoverage()
  setRange()
  getRange()

Google_Service_Genomics_Dataset:: (8 methods):
  setCreateTime()
  getCreateTime()
  setId()
  getId()
  setName()
  getName()
  setProjectId()
  getProjectId()

Google_Service_Genomics_Empty:: (0 methods):

Google_Service_Genomics_Experiment:: (8 methods):
  setInstrumentModel()
  getInstrumentModel()
  setLibraryId()
  getLibraryId()
  setPlatformUnit()
  getPlatformUnit()
  setSequencingCenter()
  getSequencingCenter()

Google_Service_Genomics_ExportReadGroupSetRequest:: (6 methods):
  setExportUri()
  getExportUri()
  setProjectId()
  getProjectId()
  setReferenceNames()
  getReferenceNames()

Google_Service_Genomics_ExportVariantSetRequest:: (10 methods):
  setBigqueryDataset()
  getBigqueryDataset()
  setBigqueryTable()
  getBigqueryTable()
  setCallSetIds()
  getCallSetIds()
  setFormat()
  getFormat()
  setProjectId()
  getProjectId()

Google_Service_Genomics_GetIamPolicyRequest:: (0 methods):

Google_Service_Genomics_ImportReadGroupSetsRequest:: (8 methods):
  setDatasetId()
  getDatasetId()
  setPartitionStrategy()
  getPartitionStrategy()
  setReferenceSetId()
  getReferenceSetId()
  setSourceUris()
  getSourceUris()

Google_Service_Genomics_ImportReadGroupSetsResponse:: (2 methods):
  setReadGroupSetIds()
  getReadGroupSetIds()

Google_Service_Genomics_ImportVariantsRequest:: (8 methods):
  setFormat()
  getFormat()
  setNormalizeReferenceNames()
  getNormalizeReferenceNames()
  setSourceUris()
  getSourceUris()
  setVariantSetId()
  getVariantSetId()

Google_Service_Genomics_ImportVariantsResponse:: (2 methods):
  setCallSetIds()
  getCallSetIds()

Google_Service_Genomics_LinearAlignment:: (6 methods):
  setCigar()
  getCigar()
  setMappingQuality()
  getMappingQuality()
  setPosition()
  getPosition()

Google_Service_Genomics_ListBasesResponse:: (6 methods):
  setNextPageToken()
  getNextPageToken()
  setOffset()
  getOffset()
  setSequence()
  getSequence()

Google_Service_Genomics_ListCoverageBucketsResponse:: (6 methods):
  setBucketWidth()
  getBucketWidth()
  setCoverageBuckets()
  getCoverageBuckets()
  setNextPageToken()
  getNextPageToken()

Google_Service_Genomics_ListDatasetsResponse:: (4 methods):
  setDatasets()
  getDatasets()
  setNextPageToken()
  getNextPageToken()

Google_Service_Genomics_ListOperationsResponse:: (4 methods):
  setNextPageToken()
  getNextPageToken()
  setOperations()
  getOperations()

Google_Service_Genomics_Operation:: (10 methods):
  setDone()
  getDone()
  setError()
  getError()
  setMetadata()
  getMetadata()
  setName()
  getName()
  setResponse()
  getResponse()

Google_Service_Genomics_OperationEvent:: (2 methods):
  setDescription()
  getDescription()

Google_Service_Genomics_OperationMetadata:: (8 methods):
  setCreateTime()
  getCreateTime()
  setEvents()
  getEvents()
  setProjectId()
  getProjectId()
  setRequest()
  getRequest()

Google_Service_Genomics_OperationMetadataRequest:: (0 methods):

Google_Service_Genomics_OperationResponse:: (0 methods):

Google_Service_Genomics_Policy:: (6 methods):
  setBindings()
  getBindings()
  setEtag()
  getEtag()
  setVersion()
  getVersion()

Google_Service_Genomics_Position:: (6 methods):
  setPosition()
  getPosition()
  setReferenceName()
  getReferenceName()
  setReverseStrand()
  getReverseStrand()

Google_Service_Genomics_Program:: (10 methods):
  setCommandLine()
  getCommandLine()
  setId()
  getId()
  setName()
  getName()
  setPrevProgramId()
  getPrevProgramId()
  setVersion()
  getVersion()

Google_Service_Genomics_Range:: (6 methods):
  setEnd()
  getEnd()
  setReferenceName()
  getReferenceName()
  setStart()
  getStart()

Google_Service_Genomics_Read:: (34 methods):
  setAlignedQuality()
  getAlignedQuality()
  setAlignedSequence()
  getAlignedSequence()
  setAlignment()
  getAlignment()
  setDuplicateFragment()
  getDuplicateFragment()
  setFailedVendorQualityChecks()
  getFailedVendorQualityChecks()
  setFragmentLength()
  getFragmentLength()
  setFragmentName()
  getFragmentName()
  setId()
  getId()
  setInfo()
  getInfo()
  setNextMatePosition()
  getNextMatePosition()
  setNumberReads()
  getNumberReads()
  setProperPlacement()
  getProperPlacement()
  setReadGroupId()
  getReadGroupId()
  setReadGroupSetId()
  getReadGroupSetId()
  setReadNumber()
  getReadNumber()
  setSecondaryAlignment()
  getSecondaryAlignment()
  setSupplementaryAlignment()
  getSupplementaryAlignment()

Google_Service_Genomics_ReadGroup:: (20 methods):
  setDatasetId()
  getDatasetId()
  setDescription()
  getDescription()
  setExperiment()
  getExperiment()
  setId()
  getId()
  setInfo()
  getInfo()
  setName()
  getName()
  setPredictedInsertSize()
  getPredictedInsertSize()
  setPrograms()
  getPrograms()
  setReferenceSetId()
  getReferenceSetId()
  setSampleId()
  getSampleId()

Google_Service_Genomics_ReadGroupInfo:: (0 methods):

Google_Service_Genomics_ReadGroupSet:: (14 methods):
  setDatasetId()
  getDatasetId()
  setFilename()
  getFilename()
  setId()
  getId()
  setInfo()
  getInfo()
  setName()
  getName()
  setReadGroups()
  getReadGroups()
  setReferenceSetId()
  getReferenceSetId()

Google_Service_Genomics_ReadGroupSetInfo:: (0 methods):

Google_Service_Genomics_ReadInfo:: (0 methods):

Google_Service_Genomics_Reference:: (14 methods):
  setId()
  getId()
  setLength()
  getLength()
  setMd5checksum()
  getMd5checksum()
  setName()
  getName()
  setNcbiTaxonId()
  getNcbiTaxonId()
  setSourceAccessions()
  getSourceAccessions()
  setSourceUri()
  getSourceUri()

Google_Service_Genomics_ReferenceBound:: (4 methods):
  setReferenceName()
  getReferenceName()
  setUpperBound()
  getUpperBound()

Google_Service_Genomics_ReferenceSet:: (16 methods):
  setAssemblyId()
  getAssemblyId()
  setDescription()
  getDescription()
  setId()
  getId()
  setMd5checksum()
  getMd5checksum()
  setNcbiTaxonId()
  getNcbiTaxonId()
  setReferenceIds()
  getReferenceIds()
  setSourceAccessions()
  getSourceAccessions()
  setSourceUri()
  getSourceUri()

Google_Service_Genomics_SearchCallSetsRequest:: (8 methods):
  setName()
  getName()
  setPageSize()
  getPageSize()
  setPageToken()
  getPageToken()
  setVariantSetIds()
  getVariantSetIds()

Google_Service_Genomics_SearchCallSetsResponse:: (4 methods):
  setCallSets()
  getCallSets()
  setNextPageToken()
  getNextPageToken()

Google_Service_Genomics_SearchReadGroupSetsRequest:: (8 methods):
  setDatasetIds()
  getDatasetIds()
  setName()
  getName()
  setPageSize()
  getPageSize()
  setPageToken()
  getPageToken()

Google_Service_Genomics_SearchReadGroupSetsResponse:: (4 methods):
  setNextPageToken()
  getNextPageToken()
  setReadGroupSets()
  getReadGroupSets()

Google_Service_Genomics_SearchReadsRequest:: (14 methods):
  setEnd()
  getEnd()
  setPageSize()
  getPageSize()
  setPageToken()
  getPageToken()
  setReadGroupIds()
  getReadGroupIds()
  setReadGroupSetIds()
  getReadGroupSetIds()
  setReferenceName()
  getReferenceName()
  setStart()
  getStart()

Google_Service_Genomics_SearchReadsResponse:: (4 methods):
  setAlignments()
  getAlignments()
  setNextPageToken()
  getNextPageToken()

Google_Service_Genomics_SearchReferenceSetsRequest:: (10 methods):
  setAccessions()
  getAccessions()
  setAssemblyId()
  getAssemblyId()
  setMd5checksums()
  getMd5checksums()
  setPageSize()
  getPageSize()
  setPageToken()
  getPageToken()

Google_Service_Genomics_SearchReferenceSetsResponse:: (4 methods):
  setNextPageToken()
  getNextPageToken()
  setReferenceSets()
  getReferenceSets()

Google_Service_Genomics_SearchReferencesRequest:: (10 methods):
  setAccessions()
  getAccessions()
  setMd5checksums()
  getMd5checksums()
  setPageSize()
  getPageSize()
  setPageToken()
  getPageToken()
  setReferenceSetId()
  getReferenceSetId()

Google_Service_Genomics_SearchReferencesResponse:: (4 methods):
  setNextPageToken()
  getNextPageToken()
  setReferences()
  getReferences()

Google_Service_Genomics_SearchVariantSetsRequest:: (6 methods):
  setDatasetIds()
  getDatasetIds()
  setPageSize()
  getPageSize()
  setPageToken()
  getPageToken()

Google_Service_Genomics_SearchVariantSetsResponse:: (4 methods):
  setNextPageToken()
  getNextPageToken()
  setVariantSets()
  getVariantSets()

Google_Service_Genomics_SearchVariantsRequest:: (18 methods):
  setCallSetIds()
  getCallSetIds()
  setEnd()
  getEnd()
  setMaxCalls()
  getMaxCalls()
  setPageSize()
  getPageSize()
  setPageToken()
  getPageToken()
  setReferenceName()
  getReferenceName()
  setStart()
  getStart()
  setVariantName()
  getVariantName()
  setVariantSetIds()
  getVariantSetIds()

Google_Service_Genomics_SearchVariantsResponse:: (4 methods):
  setNextPageToken()
  getNextPageToken()
  setVariants()
  getVariants()

Google_Service_Genomics_SetIamPolicyRequest:: (2 methods):
  setPolicy()
  getPolicy()

Google_Service_Genomics_Status:: (6 methods):
  setCode()
  getCode()
  setDetails()
  getDetails()
  setMessage()
  getMessage()

Google_Service_Genomics_StatusDetails:: (0 methods):

Google_Service_Genomics_TestIamPermissionsRequest:: (2 methods):
  setPermissions()
  getPermissions()

Google_Service_Genomics_TestIamPermissionsResponse:: (2 methods):
  setPermissions()
  getPermissions()

Google_Service_Genomics_UndeleteDatasetRequest:: (0 methods):

Google_Service_Genomics_Variant:: (26 methods):
  setAlternateBases()
  getAlternateBases()
  setCalls()
  getCalls()
  setCreated()
  getCreated()
  setEnd()
  getEnd()
  setFilter()
  getFilter()
  setId()
  getId()
  setInfo()
  getInfo()
  setNames()
  getNames()
  setQuality()
  getQuality()
  setReferenceBases()
  getReferenceBases()
  setReferenceName()
  getReferenceName()
  setStart()
  getStart()
  setVariantSetId()
  getVariantSetId()

Google_Service_Genomics_VariantCall:: (12 methods):
  setCallSetId()
  getCallSetId()
  setCallSetName()
  getCallSetName()
  setGenotype()
  getGenotype()
  setGenotypeLikelihood()
  getGenotypeLikelihood()
  setInfo()
  getInfo()
  setPhaseset()
  getPhaseset()

Google_Service_Genomics_VariantCallInfo:: (0 methods):

Google_Service_Genomics_VariantInfo:: (0 methods):

Google_Service_Genomics_VariantSet:: (8 methods):
  setDatasetId()
  getDatasetId()
  setId()
  getId()
  setMetadata()
  getMetadata()
  setReferenceBounds()
  getReferenceBounds()

Google_Service_Genomics_VariantSetMetadata:: (14 methods):
  setDescription()
  getDescription()
  setId()
  getId()
  setInfo()
  getInfo()
  setKey()
  getKey()
  setNumber()
  getNumber()
  setType()
  getType()
  setValue()
  getValue()

Google_Service_Genomics_VariantSetMetadataInfo:: (0 methods):


Class: Google_Service_Genomics  - X-Ref

Service definition for Genomics (v1).

<p>
An API to store, process, explore, and share DNA sequence reads, reference-
based alignments, and variant calls.</p>

<p>
For more information about this service, see the API
<a href="" target="_blank">Documentation</a>
</p>

__construct(Google_Client $client)   X-Ref
Constructs the internal representation of the Genomics service.

param: Google_Client $client

Class: Google_Service_Genomics_Callsets_Resource  - X-Ref

The "callsets" collection of methods.
Typical usage is:
<code>
$genomicsService = new Google_Service_Genomics(...);
$callsets = $genomicsService->callsets;
</code>

create(Google_Service_Genomics_CallSet $postBody, $optParams = array()   X-Ref
Creates a new call set. (callsets.create)

param: Google_CallSet $postBody
param: array $optParams Optional parameters.
return: Google_Service_Genomics_CallSet

delete($callSetId, $optParams = array()   X-Ref
Deletes a call set. (callsets.delete)

param: string $callSetId The ID of the call set to be deleted.
param: array $optParams Optional parameters.
return: Google_Service_Genomics_Empty

get($callSetId, $optParams = array()   X-Ref
Gets a call set by ID. (callsets.get)

param: string $callSetId The ID of the call set.
param: array $optParams Optional parameters.
return: Google_Service_Genomics_CallSet

patch($callSetId, Google_Service_Genomics_CallSet $postBody, $optParams = array()   X-Ref
Updates a call set. This method supports patch semantics. (callsets.patch)

param: string $callSetId The ID of the call set to be updated.
param: Google_CallSet $postBody
param: array $optParams Optional parameters.
return: Google_Service_Genomics_CallSet

search(Google_Service_Genomics_SearchCallSetsRequest $postBody, $optParams = array()   X-Ref
Gets a list of call sets matching the criteria. Implements [GlobalAllianceApi
.searchCallSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resour
ces/avro/variantmethods.avdl#L178). (callsets.search)

param: Google_SearchCallSetsRequest $postBody
param: array $optParams Optional parameters.
return: Google_Service_Genomics_SearchCallSetsResponse

Class: Google_Service_Genomics_Datasets_Resource  - X-Ref

The "datasets" collection of methods.
Typical usage is:
<code>
$genomicsService = new Google_Service_Genomics(...);
$datasets = $genomicsService->datasets;
</code>

create(Google_Service_Genomics_Dataset $postBody, $optParams = array()   X-Ref
Creates a new dataset. (datasets.create)

param: Google_Dataset $postBody
param: array $optParams Optional parameters.
return: Google_Service_Genomics_Dataset

delete($datasetId, $optParams = array()   X-Ref
Deletes a dataset. (datasets.delete)

param: string $datasetId The ID of the dataset to be deleted.
param: array $optParams Optional parameters.
return: Google_Service_Genomics_Empty

get($datasetId, $optParams = array()   X-Ref
Gets a dataset by ID. (datasets.get)

param: string $datasetId The ID of the dataset.
param: array $optParams Optional parameters.
return: Google_Service_Genomics_Dataset

getIamPolicy($resource, Google_Service_Genomics_GetIamPolicyRequest $postBody, $optParams = array()   X-Ref
Gets the access control policy for the dataset. Is empty if the policy or the
resource does not exist. See Getting a Policy for more information.
(datasets.getIamPolicy)

param: string $resource REQUIRED: The resource for which policy is being
param: Google_GetIamPolicyRequest $postBody
param: array $optParams Optional parameters.
return: Google_Service_Genomics_Policy

listDatasets($optParams = array()   X-Ref
Lists datasets within a project. (datasets.listDatasets)

param: array $optParams Optional parameters.
return: Google_Service_Genomics_ListDatasetsResponse

patch($datasetId, Google_Service_Genomics_Dataset $postBody, $optParams = array()   X-Ref
Updates a dataset. This method supports patch semantics. (datasets.patch)

param: string $datasetId The ID of the dataset to be updated.
param: Google_Dataset $postBody
param: array $optParams Optional parameters.
return: Google_Service_Genomics_Dataset

setIamPolicy($resource, Google_Service_Genomics_SetIamPolicyRequest $postBody, $optParams = array()   X-Ref
Sets the access control policy on the specified dataset. Replaces any
existing policy. See Setting a Policy for more information.
(datasets.setIamPolicy)

param: string $resource REQUIRED: The resource for which policy is being
param: Google_SetIamPolicyRequest $postBody
param: array $optParams Optional parameters.
return: Google_Service_Genomics_Policy

testIamPermissions($resource, Google_Service_Genomics_TestIamPermissionsRequest $postBody, $optParams = array()   X-Ref
Returns permissions that a caller has on the specified resource. See Testing
Permissions for more information. (datasets.testIamPermissions)

param: string $resource REQUIRED: The resource for which policy is being
param: Google_TestIamPermissionsRequest $postBody
param: array $optParams Optional parameters.
return: Google_Service_Genomics_TestIamPermissionsResponse

undelete($datasetId, Google_Service_Genomics_UndeleteDatasetRequest $postBody, $optParams = array()   X-Ref
Undeletes a dataset by restoring a dataset which was deleted via this API.
This operation is only possible for a week after the deletion occurred.
(datasets.undelete)

param: string $datasetId The ID of the dataset to be undeleted.
param: Google_UndeleteDatasetRequest $postBody
param: array $optParams Optional parameters.
return: Google_Service_Genomics_Dataset

Class: Google_Service_Genomics_Operations_Resource  - X-Ref

The "operations" collection of methods.
Typical usage is:
<code>
$genomicsService = new Google_Service_Genomics(...);
$operations = $genomicsService->operations;
</code>

cancel($name, Google_Service_Genomics_CancelOperationRequest $postBody, $optParams = array()   X-Ref
Starts asynchronous cancellation on a long-running operation. The server
makes a best effort to cancel the operation, but success is not guaranteed.
Clients may use Operations.GetOperation or Operations.ListOperations to check
whether the cancellation succeeded or the operation completed despite
cancellation. (operations.cancel)

param: string $name The name of the operation resource to be cancelled.
param: Google_CancelOperationRequest $postBody
param: array $optParams Optional parameters.
return: Google_Service_Genomics_Empty

delete($name, $optParams = array()   X-Ref
This method is not implemented. To cancel an operation, please use
Operations.CancelOperation. (operations.delete)

param: string $name The name of the operation resource to be deleted.
param: array $optParams Optional parameters.
return: Google_Service_Genomics_Empty

get($name, $optParams = array()   X-Ref
Gets the latest state of a long-running operation. Clients can use this
method to poll the operation result at intervals as recommended by the API
service. (operations.get)

param: string $name The name of the operation resource.
param: array $optParams Optional parameters.
return: Google_Service_Genomics_Operation

listOperations($name, $optParams = array()   X-Ref
Lists operations that match the specified filter in the request.
(operations.listOperations)

param: string $name The name of the operation collection.
param: array $optParams Optional parameters.
return: Google_Service_Genomics_ListOperationsResponse

Class: Google_Service_Genomics_Readgroupsets_Resource  - X-Ref

The "readgroupsets" collection of methods.
Typical usage is:
<code>
$genomicsService = new Google_Service_Genomics(...);
$readgroupsets = $genomicsService->readgroupsets;
</code>

delete($readGroupSetId, $optParams = array()   X-Ref
Deletes a read group set. (readgroupsets.delete)

param: string $readGroupSetId The ID of the read group set to be deleted. The
param: array $optParams Optional parameters.
return: Google_Service_Genomics_Empty

export($readGroupSetId, Google_Service_Genomics_ExportReadGroupSetRequest $postBody, $optParams = array()   X-Ref
Exports a read group set to a BAM file in Google Cloud Storage. Note that
currently there may be some differences between exported BAM files and the
original BAM file at the time of import. See
[ImportReadGroupSets](google.genomics.v1.ReadServiceV1.ImportReadGroupSets)
for caveats. (readgroupsets.export)

param: string $readGroupSetId Required. The ID of the read group set to
param: Google_ExportReadGroupSetRequest $postBody
param: array $optParams Optional parameters.
return: Google_Service_Genomics_Operation

get($readGroupSetId, $optParams = array()   X-Ref
Gets a read group set by ID. (readgroupsets.get)

param: string $readGroupSetId The ID of the read group set.
param: array $optParams Optional parameters.
return: Google_Service_Genomics_ReadGroupSet

import(Google_Service_Genomics_ImportReadGroupSetsRequest $postBody, $optParams = array()   X-Ref
Creates read group sets by asynchronously importing the provided information.
The caller must have WRITE permissions to the dataset. ## Notes on
[BAM](https://samtools.github.io/hts-specs/SAMv1.pdf) import - Tags will be
converted to strings - tag types are not preserved - Comments (`@CO`) in the
input file header will not be preserved - Original header order of references
(`@SQ`) will not be preserved - Any reverse stranded unmapped reads will be
reverse complemented, and their qualities (and "BQ" tag, if any) will be
reversed - Unmapped reads will be stripped of positional information
(reference name and position) (readgroupsets.import)

param: Google_ImportReadGroupSetsRequest $postBody
param: array $optParams Optional parameters.
return: Google_Service_Genomics_Operation

patch($readGroupSetId, Google_Service_Genomics_ReadGroupSet $postBody, $optParams = array()   X-Ref
Updates a read group set. This method supports patch semantics.
(readgroupsets.patch)

param: string $readGroupSetId The ID of the read group set to be updated. The
param: Google_ReadGroupSet $postBody
param: array $optParams Optional parameters.
return: Google_Service_Genomics_ReadGroupSet

search(Google_Service_Genomics_SearchReadGroupSetsRequest $postBody, $optParams = array()   X-Ref
Searches for read group sets matching the criteria. Implements [GlobalAllianc
eApi.searchReadGroupSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/ma
in/resources/avro/readmethods.avdl#L135). (readgroupsets.search)

param: Google_SearchReadGroupSetsRequest $postBody
param: array $optParams Optional parameters.
return: Google_Service_Genomics_SearchReadGroupSetsResponse

Class: Google_Service_Genomics_ReadgroupsetsCoveragebuckets_Resource  - X-Ref

The "coveragebuckets" collection of methods.
Typical usage is:
<code>
$genomicsService = new Google_Service_Genomics(...);
$coveragebuckets = $genomicsService->coveragebuckets;
</code>

listReadgroupsetsCoveragebuckets($readGroupSetId, $optParams = array()   X-Ref
Lists fixed width coverage buckets for a read group set, each of which
correspond to a range of a reference sequence. Each bucket summarizes
coverage information across its corresponding genomic range. Coverage is
defined as the number of reads which are aligned to a given base in the
reference sequence. Coverage buckets are available at several precomputed
bucket widths, enabling retrieval of various coverage 'zoom levels'. The
caller must have READ permissions for the target read group set.
(coveragebuckets.listReadgroupsetsCoveragebuckets)

param: string $readGroupSetId Required. The ID of the read group set over
param: array $optParams Optional parameters.
return: Google_Service_Genomics_ListCoverageBucketsResponse

Class: Google_Service_Genomics_Reads_Resource  - X-Ref

The "reads" collection of methods.
Typical usage is:
<code>
$genomicsService = new Google_Service_Genomics(...);
$reads = $genomicsService->reads;
</code>

search(Google_Service_Genomics_SearchReadsRequest $postBody, $optParams = array()   X-Ref
Gets a list of reads for one or more read group sets. Reads search operates
over a genomic coordinate space of reference sequence & position defined over
the reference sequences to which the requested read group sets are aligned.
If a target positional range is specified, search returns all reads whose
alignment to the reference genome overlap the range. A query which specifies
only read group set IDs yields all reads in those read group sets, including
unmapped reads. All reads returned (including reads on subsequent pages) are
ordered by genomic coordinate (reference sequence & position). Reads with
equivalent genomic coordinates are returned in a deterministic order.
Implements [GlobalAllianceApi.searchReads](https://github.com/ga4gh/schemas/b
lob/v0.5.1/src/main/resources/avro/readmethods.avdl#L85). (reads.search)

param: Google_SearchReadsRequest $postBody
param: array $optParams Optional parameters.
return: Google_Service_Genomics_SearchReadsResponse

Class: Google_Service_Genomics_References_Resource  - X-Ref

The "references" collection of methods.
Typical usage is:
<code>
$genomicsService = new Google_Service_Genomics(...);
$references = $genomicsService->references;
</code>

get($referenceId, $optParams = array()   X-Ref
Gets a reference. Implements [GlobalAllianceApi.getReference](https://github.
com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L
158). (references.get)

param: string $referenceId The ID of the reference.
param: array $optParams Optional parameters.
return: Google_Service_Genomics_Reference

search(Google_Service_Genomics_SearchReferencesRequest $postBody, $optParams = array()   X-Ref
Searches for references which match the given criteria. Implements [GlobalAll
ianceApi.searchReferences](https://github.com/ga4gh/schemas/blob/v0.5.1/src/m
ain/resources/avro/referencemethods.avdl#L146). (references.search)

param: Google_SearchReferencesRequest $postBody
param: array $optParams Optional parameters.
return: Google_Service_Genomics_SearchReferencesResponse

Class: Google_Service_Genomics_ReferencesBases_Resource  - X-Ref

The "bases" collection of methods.
Typical usage is:
<code>
$genomicsService = new Google_Service_Genomics(...);
$bases = $genomicsService->bases;
</code>

listReferencesBases($referenceId, $optParams = array()   X-Ref
Lists the bases in a reference, optionally restricted to a range. Implements
[GlobalAllianceApi.getReferenceBases](https://github.com/ga4gh/schemas/blob/v
0.5.1/src/main/resources/avro/referencemethods.avdl#L221).
(bases.listReferencesBases)

param: string $referenceId The ID of the reference.
param: array $optParams Optional parameters.
return: Google_Service_Genomics_ListBasesResponse

Class: Google_Service_Genomics_Referencesets_Resource  - X-Ref

The "referencesets" collection of methods.
Typical usage is:
<code>
$genomicsService = new Google_Service_Genomics(...);
$referencesets = $genomicsService->referencesets;
</code>

get($referenceSetId, $optParams = array()   X-Ref
Gets a reference set. Implements [GlobalAllianceApi.getReferenceSet](https://
github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods
.avdl#L83). (referencesets.get)

param: string $referenceSetId The ID of the reference set.
param: array $optParams Optional parameters.
return: Google_Service_Genomics_ReferenceSet

search(Google_Service_Genomics_SearchReferenceSetsRequest $postBody, $optParams = array()   X-Ref
Searches for reference sets which match the given criteria. Implements [Globa
lAllianceApi.searchReferenceSets](http://ga4gh.org/documentation/api/v0.5.1/g
a4gh_api.html#/schema/org.ga4gh.searchReferenceSets). (referencesets.search)

param: Google_SearchReferenceSetsRequest $postBody
param: array $optParams Optional parameters.
return: Google_Service_Genomics_SearchReferenceSetsResponse

Class: Google_Service_Genomics_Variants_Resource  - X-Ref

The "variants" collection of methods.
Typical usage is:
<code>
$genomicsService = new Google_Service_Genomics(...);
$variants = $genomicsService->variants;
</code>

create(Google_Service_Genomics_Variant $postBody, $optParams = array()   X-Ref
Creates a new variant. (variants.create)

param: Google_Variant $postBody
param: array $optParams Optional parameters.
return: Google_Service_Genomics_Variant

delete($variantId, $optParams = array()   X-Ref
Deletes a variant. (variants.delete)

param: string $variantId The ID of the variant to be deleted.
param: array $optParams Optional parameters.
return: Google_Service_Genomics_Empty

get($variantId, $optParams = array()   X-Ref
Gets a variant by ID. (variants.get)

param: string $variantId The ID of the variant.
param: array $optParams Optional parameters.
return: Google_Service_Genomics_Variant

import(Google_Service_Genomics_ImportVariantsRequest $postBody, $optParams = array()   X-Ref
Creates variant data by asynchronously importing the provided information.
The variants for import will be merged with any existing variant that matches
its reference sequence, start, end, reference bases, and alternative bases.
If no such variant exists, a new one will be created. When variants are
merged, the call information from the new variant is added to the existing
variant, and other fields (such as key/value pairs) are discarded. In
particular, this means for merged VCF variants that have conflicting INFO
fields, some data will be arbitrarily discarded. As a special case, for
single-sample VCF files, QUAL and FILTER fields will be moved to the call
level; these are sometimes interpreted in a call-specific context. Imported
VCF headers are appended to the metadata already in a variant set.
(variants.import)

param: Google_ImportVariantsRequest $postBody
param: array $optParams Optional parameters.
return: Google_Service_Genomics_Operation

patch($variantId, Google_Service_Genomics_Variant $postBody, $optParams = array()   X-Ref
Updates a variant. This method supports patch semantics. Returns the modified
variant without its calls. (variants.patch)

param: string $variantId The ID of the variant to be updated.
param: Google_Variant $postBody
param: array $optParams Optional parameters.
return: Google_Service_Genomics_Variant

search(Google_Service_Genomics_SearchVariantsRequest $postBody, $optParams = array()   X-Ref
Gets a list of variants matching the criteria. Implements [GlobalAllianceApi.
searchVariants](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resourc
es/avro/variantmethods.avdl#L126). (variants.search)

param: Google_SearchVariantsRequest $postBody
param: array $optParams Optional parameters.
return: Google_Service_Genomics_SearchVariantsResponse

Class: Google_Service_Genomics_Variantsets_Resource  - X-Ref

The "variantsets" collection of methods.
Typical usage is:
<code>
$genomicsService = new Google_Service_Genomics(...);
$variantsets = $genomicsService->variantsets;
</code>

create(Google_Service_Genomics_VariantSet $postBody, $optParams = array()   X-Ref
Creates a new variant set. The provided variant set must have a valid
`datasetId` set - all other fields are optional. Note that the `id` field
will be ignored, as this is assigned by the server. (variantsets.create)

param: Google_VariantSet $postBody
param: array $optParams Optional parameters.
return: Google_Service_Genomics_VariantSet

delete($variantSetId, $optParams = array()   X-Ref
Deletes the contents of a variant set. The variant set object is not deleted.
(variantsets.delete)

param: string $variantSetId The ID of the variant set to be deleted.
param: array $optParams Optional parameters.
return: Google_Service_Genomics_Empty

export($variantSetId, Google_Service_Genomics_ExportVariantSetRequest $postBody, $optParams = array()   X-Ref
Exports variant set data to an external destination. (variantsets.export)

param: string $variantSetId Required. The ID of the variant set that contains
param: Google_ExportVariantSetRequest $postBody
param: array $optParams Optional parameters.
return: Google_Service_Genomics_Operation

get($variantSetId, $optParams = array()   X-Ref
Gets a variant set by ID. (variantsets.get)

param: string $variantSetId Required. The ID of the variant set.
param: array $optParams Optional parameters.
return: Google_Service_Genomics_VariantSet

patch($variantSetId, Google_Service_Genomics_VariantSet $postBody, $optParams = array()   X-Ref
Updates a variant set. This method supports patch semantics.
(variantsets.patch)

param: string $variantSetId The ID of the variant to be updated (must already
param: Google_VariantSet $postBody
param: array $optParams Optional parameters.
return: Google_Service_Genomics_VariantSet

search(Google_Service_Genomics_SearchVariantSetsRequest $postBody, $optParams = array()   X-Ref
Returns a list of all variant sets matching search criteria. Implements [Glob
alAllianceApi.searchVariantSets](https://github.com/ga4gh/schemas/blob/v0.5.1
/src/main/resources/avro/variantmethods.avdl#L49). (variantsets.search)

param: Google_SearchVariantSetsRequest $postBody
param: array $optParams Optional parameters.
return: Google_Service_Genomics_SearchVariantSetsResponse

Class: Google_Service_Genomics_Binding  - X-Ref

setMembers($members)   X-Ref
No description

getMembers()   X-Ref
No description

setRole($role)   X-Ref
No description

getRole()   X-Ref
No description

Class: Google_Service_Genomics_CallSet  - X-Ref

setCreated($created)   X-Ref
No description

getCreated()   X-Ref
No description

setId($id)   X-Ref
No description

getId()   X-Ref
No description

setInfo($info)   X-Ref
No description

getInfo()   X-Ref
No description

setName($name)   X-Ref
No description

getName()   X-Ref
No description

setSampleId($sampleId)   X-Ref
No description

getSampleId()   X-Ref
No description

setVariantSetIds($variantSetIds)   X-Ref
No description

getVariantSetIds()   X-Ref
No description

Class: Google_Service_Genomics_CigarUnit  - X-Ref

setOperation($operation)   X-Ref
No description

getOperation()   X-Ref
No description

setOperationLength($operationLength)   X-Ref
No description

getOperationLength()   X-Ref
No description

setReferenceSequence($referenceSequence)   X-Ref
No description

getReferenceSequence()   X-Ref
No description

Class: Google_Service_Genomics_CoverageBucket  - X-Ref

setMeanCoverage($meanCoverage)   X-Ref
No description

getMeanCoverage()   X-Ref
No description

setRange(Google_Service_Genomics_Range $range)   X-Ref
No description

getRange()   X-Ref
No description

Class: Google_Service_Genomics_Dataset  - X-Ref

setCreateTime($createTime)   X-Ref
No description

getCreateTime()   X-Ref
No description

setId($id)   X-Ref
No description

getId()   X-Ref
No description

setName($name)   X-Ref
No description

getName()   X-Ref
No description

setProjectId($projectId)   X-Ref
No description

getProjectId()   X-Ref
No description

Class: Google_Service_Genomics_Experiment  - X-Ref

setInstrumentModel($instrumentModel)   X-Ref
No description

getInstrumentModel()   X-Ref
No description

setLibraryId($libraryId)   X-Ref
No description

getLibraryId()   X-Ref
No description

setPlatformUnit($platformUnit)   X-Ref
No description

getPlatformUnit()   X-Ref
No description

setSequencingCenter($sequencingCenter)   X-Ref
No description

getSequencingCenter()   X-Ref
No description

Class: Google_Service_Genomics_ExportReadGroupSetRequest  - X-Ref

setExportUri($exportUri)   X-Ref
No description

getExportUri()   X-Ref
No description

setProjectId($projectId)   X-Ref
No description

getProjectId()   X-Ref
No description

setReferenceNames($referenceNames)   X-Ref
No description

getReferenceNames()   X-Ref
No description

Class: Google_Service_Genomics_ExportVariantSetRequest  - X-Ref

setBigqueryDataset($bigqueryDataset)   X-Ref
No description

getBigqueryDataset()   X-Ref
No description

setBigqueryTable($bigqueryTable)   X-Ref
No description

getBigqueryTable()   X-Ref
No description

setCallSetIds($callSetIds)   X-Ref
No description

getCallSetIds()   X-Ref
No description

setFormat($format)   X-Ref
No description

getFormat()   X-Ref
No description

setProjectId($projectId)   X-Ref
No description

getProjectId()   X-Ref
No description

Class: Google_Service_Genomics_ImportReadGroupSetsRequest  - X-Ref

setDatasetId($datasetId)   X-Ref
No description

getDatasetId()   X-Ref
No description

setPartitionStrategy($partitionStrategy)   X-Ref
No description

getPartitionStrategy()   X-Ref
No description

setReferenceSetId($referenceSetId)   X-Ref
No description

getReferenceSetId()   X-Ref
No description

setSourceUris($sourceUris)   X-Ref
No description

getSourceUris()   X-Ref
No description

Class: Google_Service_Genomics_ImportVariantsRequest  - X-Ref

setFormat($format)   X-Ref
No description

getFormat()   X-Ref
No description

setNormalizeReferenceNames($normalizeReferenceNames)   X-Ref
No description

getNormalizeReferenceNames()   X-Ref
No description

setSourceUris($sourceUris)   X-Ref
No description

getSourceUris()   X-Ref
No description

setVariantSetId($variantSetId)   X-Ref
No description

getVariantSetId()   X-Ref
No description

Class: Google_Service_Genomics_LinearAlignment  - X-Ref

setCigar($cigar)   X-Ref
No description

getCigar()   X-Ref
No description

setMappingQuality($mappingQuality)   X-Ref
No description

getMappingQuality()   X-Ref
No description

setPosition(Google_Service_Genomics_Position $position)   X-Ref
No description

getPosition()   X-Ref
No description

Class: Google_Service_Genomics_ListBasesResponse  - X-Ref

setNextPageToken($nextPageToken)   X-Ref
No description

getNextPageToken()   X-Ref
No description

setOffset($offset)   X-Ref
No description

getOffset()   X-Ref
No description

setSequence($sequence)   X-Ref
No description

getSequence()   X-Ref
No description

Class: Google_Service_Genomics_ListCoverageBucketsResponse  - X-Ref

setBucketWidth($bucketWidth)   X-Ref
No description

getBucketWidth()   X-Ref
No description

setCoverageBuckets($coverageBuckets)   X-Ref
No description

getCoverageBuckets()   X-Ref
No description

setNextPageToken($nextPageToken)   X-Ref
No description

getNextPageToken()   X-Ref
No description

Class: Google_Service_Genomics_ListDatasetsResponse  - X-Ref

setDatasets($datasets)   X-Ref
No description

getDatasets()   X-Ref
No description

setNextPageToken($nextPageToken)   X-Ref
No description

getNextPageToken()   X-Ref
No description

Class: Google_Service_Genomics_ListOperationsResponse  - X-Ref

setNextPageToken($nextPageToken)   X-Ref
No description

getNextPageToken()   X-Ref
No description

setOperations($operations)   X-Ref
No description

getOperations()   X-Ref
No description

Class: Google_Service_Genomics_Operation  - X-Ref

setDone($done)   X-Ref
No description

getDone()   X-Ref
No description

setError(Google_Service_Genomics_Status $error)   X-Ref
No description

getError()   X-Ref
No description

setMetadata($metadata)   X-Ref
No description

getMetadata()   X-Ref
No description

setName($name)   X-Ref
No description

getName()   X-Ref
No description

setResponse($response)   X-Ref
No description

getResponse()   X-Ref
No description

Class: Google_Service_Genomics_OperationMetadata  - X-Ref

setCreateTime($createTime)   X-Ref
No description

getCreateTime()   X-Ref
No description

setEvents($events)   X-Ref
No description

getEvents()   X-Ref
No description

setProjectId($projectId)   X-Ref
No description

getProjectId()   X-Ref
No description

setRequest($request)   X-Ref
No description

getRequest()   X-Ref
No description

Class: Google_Service_Genomics_Policy  - X-Ref

setBindings($bindings)   X-Ref
No description

getBindings()   X-Ref
No description

setEtag($etag)   X-Ref
No description

getEtag()   X-Ref
No description

setVersion($version)   X-Ref
No description

getVersion()   X-Ref
No description

Class: Google_Service_Genomics_Position  - X-Ref

setPosition($position)   X-Ref
No description

getPosition()   X-Ref
No description

setReferenceName($referenceName)   X-Ref
No description

getReferenceName()   X-Ref
No description

setReverseStrand($reverseStrand)   X-Ref
No description

getReverseStrand()   X-Ref
No description

Class: Google_Service_Genomics_Program  - X-Ref

setCommandLine($commandLine)   X-Ref
No description

getCommandLine()   X-Ref
No description

setId($id)   X-Ref
No description

getId()   X-Ref
No description

setName($name)   X-Ref
No description

getName()   X-Ref
No description

setPrevProgramId($prevProgramId)   X-Ref
No description

getPrevProgramId()   X-Ref
No description

setVersion($version)   X-Ref
No description

getVersion()   X-Ref
No description

Class: Google_Service_Genomics_Range  - X-Ref

setEnd($end)   X-Ref
No description

getEnd()   X-Ref
No description

setReferenceName($referenceName)   X-Ref
No description

getReferenceName()   X-Ref
No description

setStart($start)   X-Ref
No description

getStart()   X-Ref
No description

Class: Google_Service_Genomics_Read  - X-Ref

setAlignedQuality($alignedQuality)   X-Ref
No description

getAlignedQuality()   X-Ref
No description

setAlignedSequence($alignedSequence)   X-Ref
No description

getAlignedSequence()   X-Ref
No description

setAlignment(Google_Service_Genomics_LinearAlignment $alignment)   X-Ref
No description

getAlignment()   X-Ref
No description

setDuplicateFragment($duplicateFragment)   X-Ref
No description

getDuplicateFragment()   X-Ref
No description

setFailedVendorQualityChecks($failedVendorQualityChecks)   X-Ref
No description

getFailedVendorQualityChecks()   X-Ref
No description

setFragmentLength($fragmentLength)   X-Ref
No description

getFragmentLength()   X-Ref
No description

setFragmentName($fragmentName)   X-Ref
No description

getFragmentName()   X-Ref
No description

setId($id)   X-Ref
No description

getId()   X-Ref
No description

setInfo($info)   X-Ref
No description

getInfo()   X-Ref
No description

setNextMatePosition(Google_Service_Genomics_Position $nextMatePosition)   X-Ref
No description

getNextMatePosition()   X-Ref
No description

setNumberReads($numberReads)   X-Ref
No description

getNumberReads()   X-Ref
No description

setProperPlacement($properPlacement)   X-Ref
No description

getProperPlacement()   X-Ref
No description

setReadGroupId($readGroupId)   X-Ref
No description

getReadGroupId()   X-Ref
No description

setReadGroupSetId($readGroupSetId)   X-Ref
No description

getReadGroupSetId()   X-Ref
No description

setReadNumber($readNumber)   X-Ref
No description

getReadNumber()   X-Ref
No description

setSecondaryAlignment($secondaryAlignment)   X-Ref
No description

getSecondaryAlignment()   X-Ref
No description

setSupplementaryAlignment($supplementaryAlignment)   X-Ref
No description

getSupplementaryAlignment()   X-Ref
No description

Class: Google_Service_Genomics_ReadGroup  - X-Ref

setDatasetId($datasetId)   X-Ref
No description

getDatasetId()   X-Ref
No description

setDescription($description)   X-Ref
No description

getDescription()   X-Ref
No description

setExperiment(Google_Service_Genomics_Experiment $experiment)   X-Ref
No description

getExperiment()   X-Ref
No description

setId($id)   X-Ref
No description

getId()   X-Ref
No description

setInfo($info)   X-Ref
No description

getInfo()   X-Ref
No description

setName($name)   X-Ref
No description

getName()   X-Ref
No description

setPredictedInsertSize($predictedInsertSize)   X-Ref
No description

getPredictedInsertSize()   X-Ref
No description

setPrograms($programs)   X-Ref
No description

getPrograms()   X-Ref
No description

setReferenceSetId($referenceSetId)   X-Ref
No description

getReferenceSetId()   X-Ref
No description

setSampleId($sampleId)   X-Ref
No description

getSampleId()   X-Ref
No description

Class: Google_Service_Genomics_ReadGroupSet  - X-Ref

setDatasetId($datasetId)   X-Ref
No description

getDatasetId()   X-Ref
No description

setFilename($filename)   X-Ref
No description

getFilename()   X-Ref
No description

setId($id)   X-Ref
No description

getId()   X-Ref
No description

setInfo($info)   X-Ref
No description

getInfo()   X-Ref
No description

setName($name)   X-Ref
No description

getName()   X-Ref
No description

setReadGroups($readGroups)   X-Ref
No description

getReadGroups()   X-Ref
No description

setReferenceSetId($referenceSetId)   X-Ref
No description

getReferenceSetId()   X-Ref
No description

Class: Google_Service_Genomics_Reference  - X-Ref

setId($id)   X-Ref
No description

getId()   X-Ref
No description

setLength($length)   X-Ref
No description

getLength()   X-Ref
No description

setMd5checksum($md5checksum)   X-Ref
No description

getMd5checksum()   X-Ref
No description

setName($name)   X-Ref
No description

getName()   X-Ref
No description

setNcbiTaxonId($ncbiTaxonId)   X-Ref
No description

getNcbiTaxonId()   X-Ref
No description

setSourceAccessions($sourceAccessions)   X-Ref
No description

getSourceAccessions()   X-Ref
No description

setSourceUri($sourceUri)   X-Ref
No description

getSourceUri()   X-Ref
No description

Class: Google_Service_Genomics_ReferenceBound  - X-Ref

setReferenceName($referenceName)   X-Ref
No description

getReferenceName()   X-Ref
No description

setUpperBound($upperBound)   X-Ref
No description

getUpperBound()   X-Ref
No description

Class: Google_Service_Genomics_ReferenceSet  - X-Ref

setAssemblyId($assemblyId)   X-Ref
No description

getAssemblyId()   X-Ref
No description

setDescription($description)   X-Ref
No description

getDescription()   X-Ref
No description

setId($id)   X-Ref
No description

getId()   X-Ref
No description

setMd5checksum($md5checksum)   X-Ref
No description

getMd5checksum()   X-Ref
No description

setNcbiTaxonId($ncbiTaxonId)   X-Ref
No description

getNcbiTaxonId()   X-Ref
No description

setReferenceIds($referenceIds)   X-Ref
No description

getReferenceIds()   X-Ref
No description

setSourceAccessions($sourceAccessions)   X-Ref
No description

getSourceAccessions()   X-Ref
No description

setSourceUri($sourceUri)   X-Ref
No description

getSourceUri()   X-Ref
No description

Class: Google_Service_Genomics_SearchCallSetsRequest  - X-Ref

setName($name)   X-Ref
No description

getName()   X-Ref
No description

setPageSize($pageSize)   X-Ref
No description

getPageSize()   X-Ref
No description

setPageToken($pageToken)   X-Ref
No description

getPageToken()   X-Ref
No description

setVariantSetIds($variantSetIds)   X-Ref
No description

getVariantSetIds()   X-Ref
No description

Class: Google_Service_Genomics_SearchCallSetsResponse  - X-Ref

setCallSets($callSets)   X-Ref
No description

getCallSets()   X-Ref
No description

setNextPageToken($nextPageToken)   X-Ref
No description

getNextPageToken()   X-Ref
No description

Class: Google_Service_Genomics_SearchReadGroupSetsRequest  - X-Ref

setDatasetIds($datasetIds)   X-Ref
No description

getDatasetIds()   X-Ref
No description

setName($name)   X-Ref
No description

getName()   X-Ref
No description

setPageSize($pageSize)   X-Ref
No description

getPageSize()   X-Ref
No description

setPageToken($pageToken)   X-Ref
No description

getPageToken()   X-Ref
No description

Class: Google_Service_Genomics_SearchReadsRequest  - X-Ref

setEnd($end)   X-Ref
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getEnd()   X-Ref
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setPageSize($pageSize)   X-Ref
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getPageSize()   X-Ref
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setPageToken($pageToken)   X-Ref
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getPageToken()   X-Ref
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setReadGroupIds($readGroupIds)   X-Ref
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getReadGroupIds()   X-Ref
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setReadGroupSetIds($readGroupSetIds)   X-Ref
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getReadGroupSetIds()   X-Ref
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setReferenceName($referenceName)   X-Ref
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getReferenceName()   X-Ref
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setStart($start)   X-Ref
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getStart()   X-Ref
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Class: Google_Service_Genomics_SearchReadsResponse  - X-Ref

setAlignments($alignments)   X-Ref
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getAlignments()   X-Ref
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setNextPageToken($nextPageToken)   X-Ref
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getNextPageToken()   X-Ref
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Class: Google_Service_Genomics_SearchReferenceSetsRequest  - X-Ref

setAccessions($accessions)   X-Ref
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getAccessions()   X-Ref
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setAssemblyId($assemblyId)   X-Ref
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getAssemblyId()   X-Ref
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setMd5checksums($md5checksums)   X-Ref
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getMd5checksums()   X-Ref
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setPageSize($pageSize)   X-Ref
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getPageSize()   X-Ref
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setPageToken($pageToken)   X-Ref
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getPageToken()   X-Ref
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Class: Google_Service_Genomics_SearchReferencesRequest  - X-Ref

setAccessions($accessions)   X-Ref
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getAccessions()   X-Ref
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setMd5checksums($md5checksums)   X-Ref
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getMd5checksums()   X-Ref
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setPageSize($pageSize)   X-Ref
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getPageSize()   X-Ref
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setPageToken($pageToken)   X-Ref
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getPageToken()   X-Ref
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setReferenceSetId($referenceSetId)   X-Ref
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getReferenceSetId()   X-Ref
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Class: Google_Service_Genomics_SearchReferencesResponse  - X-Ref

setNextPageToken($nextPageToken)   X-Ref
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getNextPageToken()   X-Ref
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setReferences($references)   X-Ref
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getReferences()   X-Ref
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Class: Google_Service_Genomics_SearchVariantSetsRequest  - X-Ref

setDatasetIds($datasetIds)   X-Ref
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getDatasetIds()   X-Ref
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setPageSize($pageSize)   X-Ref
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getPageSize()   X-Ref
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setPageToken($pageToken)   X-Ref
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getPageToken()   X-Ref
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Class: Google_Service_Genomics_SearchVariantSetsResponse  - X-Ref

setNextPageToken($nextPageToken)   X-Ref
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getNextPageToken()   X-Ref
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setVariantSets($variantSets)   X-Ref
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getVariantSets()   X-Ref
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Class: Google_Service_Genomics_SearchVariantsRequest  - X-Ref

setCallSetIds($callSetIds)   X-Ref
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getCallSetIds()   X-Ref
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setEnd($end)   X-Ref
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getEnd()   X-Ref
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setMaxCalls($maxCalls)   X-Ref
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getMaxCalls()   X-Ref
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setPageSize($pageSize)   X-Ref
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getPageSize()   X-Ref
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setPageToken($pageToken)   X-Ref
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getPageToken()   X-Ref
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setReferenceName($referenceName)   X-Ref
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getReferenceName()   X-Ref
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setStart($start)   X-Ref
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getStart()   X-Ref
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setVariantName($variantName)   X-Ref
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getVariantName()   X-Ref
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setVariantSetIds($variantSetIds)   X-Ref
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getVariantSetIds()   X-Ref
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Class: Google_Service_Genomics_SearchVariantsResponse  - X-Ref

setNextPageToken($nextPageToken)   X-Ref
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getNextPageToken()   X-Ref
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setVariants($variants)   X-Ref
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getVariants()   X-Ref
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Class: Google_Service_Genomics_SetIamPolicyRequest  - X-Ref

setPolicy(Google_Service_Genomics_Policy $policy)   X-Ref
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getPolicy()   X-Ref
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Class: Google_Service_Genomics_Status  - X-Ref

setCode($code)   X-Ref
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getCode()   X-Ref
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setDetails($details)   X-Ref
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getDetails()   X-Ref
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setMessage($message)   X-Ref
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getMessage()   X-Ref
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Class: Google_Service_Genomics_Variant  - X-Ref

setAlternateBases($alternateBases)   X-Ref
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getAlternateBases()   X-Ref
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setCalls($calls)   X-Ref
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getCalls()   X-Ref
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setCreated($created)   X-Ref
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getCreated()   X-Ref
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setEnd($end)   X-Ref
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getEnd()   X-Ref
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setFilter($filter)   X-Ref
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getFilter()   X-Ref
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setId($id)   X-Ref
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getId()   X-Ref
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setInfo($info)   X-Ref
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getInfo()   X-Ref
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setNames($names)   X-Ref
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getNames()   X-Ref
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setQuality($quality)   X-Ref
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getQuality()   X-Ref
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setReferenceBases($referenceBases)   X-Ref
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getReferenceBases()   X-Ref
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setReferenceName($referenceName)   X-Ref
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getReferenceName()   X-Ref
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setStart($start)   X-Ref
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getStart()   X-Ref
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setVariantSetId($variantSetId)   X-Ref
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getVariantSetId()   X-Ref
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Class: Google_Service_Genomics_VariantCall  - X-Ref

setCallSetId($callSetId)   X-Ref
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getCallSetId()   X-Ref
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setCallSetName($callSetName)   X-Ref
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getCallSetName()   X-Ref
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setGenotype($genotype)   X-Ref
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getGenotype()   X-Ref
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setGenotypeLikelihood($genotypeLikelihood)   X-Ref
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getGenotypeLikelihood()   X-Ref
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setInfo($info)   X-Ref
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getInfo()   X-Ref
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setPhaseset($phaseset)   X-Ref
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getPhaseset()   X-Ref
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Class: Google_Service_Genomics_VariantSet  - X-Ref

setDatasetId($datasetId)   X-Ref
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getDatasetId()   X-Ref
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setId($id)   X-Ref
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getId()   X-Ref
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setMetadata($metadata)   X-Ref
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getMetadata()   X-Ref
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setReferenceBounds($referenceBounds)   X-Ref
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getReferenceBounds()   X-Ref
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Class: Google_Service_Genomics_VariantSetMetadata  - X-Ref

setDescription($description)   X-Ref
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getDescription()   X-Ref
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setId($id)   X-Ref
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getId()   X-Ref
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setInfo($info)   X-Ref
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getInfo()   X-Ref
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setKey($key)   X-Ref
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getKey()   X-Ref
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setNumber($number)   X-Ref
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getNumber()   X-Ref
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setType($type)   X-Ref
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getType()   X-Ref
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setValue($value)   X-Ref
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getValue()   X-Ref
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