Developer Documentation
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Defines 78 classes
Google_Service_Genomics:: (1 method):
__construct()
Google_Service_Genomics_Callsets_Resource:: (5 methods):
create()
delete()
get()
patch()
search()
Google_Service_Genomics_Datasets_Resource:: (9 methods):
create()
delete()
get()
getIamPolicy()
listDatasets()
patch()
setIamPolicy()
testIamPermissions()
undelete()
Google_Service_Genomics_Operations_Resource:: (4 methods):
cancel()
delete()
get()
listOperations()
Google_Service_Genomics_Readgroupsets_Resource:: (6 methods):
delete()
export()
get()
import()
patch()
search()
Google_Service_Genomics_ReadgroupsetsCoveragebuckets_Resource:: (1 method):
listReadgroupsetsCoveragebuckets()
Google_Service_Genomics_Reads_Resource:: (1 method):
search()
Google_Service_Genomics_References_Resource:: (2 methods):
get()
search()
Google_Service_Genomics_ReferencesBases_Resource:: (1 method):
listReferencesBases()
Google_Service_Genomics_Referencesets_Resource:: (2 methods):
get()
search()
Google_Service_Genomics_Variants_Resource:: (6 methods):
create()
delete()
get()
import()
patch()
search()
Google_Service_Genomics_Variantsets_Resource:: (6 methods):
create()
delete()
export()
get()
patch()
search()
Google_Service_Genomics_Binding:: (4 methods):
setMembers()
getMembers()
setRole()
getRole()
Google_Service_Genomics_CallSet:: (12 methods):
setCreated()
getCreated()
setId()
getId()
setInfo()
getInfo()
setName()
getName()
setSampleId()
getSampleId()
setVariantSetIds()
getVariantSetIds()
Google_Service_Genomics_CallSetInfo:: (0 methods):
Google_Service_Genomics_CancelOperationRequest:: (0 methods):
Google_Service_Genomics_CigarUnit:: (6 methods):
setOperation()
getOperation()
setOperationLength()
getOperationLength()
setReferenceSequence()
getReferenceSequence()
Google_Service_Genomics_CoverageBucket:: (4 methods):
setMeanCoverage()
getMeanCoverage()
setRange()
getRange()
Google_Service_Genomics_Dataset:: (8 methods):
setCreateTime()
getCreateTime()
setId()
getId()
setName()
getName()
setProjectId()
getProjectId()
Google_Service_Genomics_Empty:: (0 methods):
Google_Service_Genomics_Experiment:: (8 methods):
setInstrumentModel()
getInstrumentModel()
setLibraryId()
getLibraryId()
setPlatformUnit()
getPlatformUnit()
setSequencingCenter()
getSequencingCenter()
Google_Service_Genomics_ExportReadGroupSetRequest:: (6 methods):
setExportUri()
getExportUri()
setProjectId()
getProjectId()
setReferenceNames()
getReferenceNames()
Google_Service_Genomics_ExportVariantSetRequest:: (10 methods):
setBigqueryDataset()
getBigqueryDataset()
setBigqueryTable()
getBigqueryTable()
setCallSetIds()
getCallSetIds()
setFormat()
getFormat()
setProjectId()
getProjectId()
Google_Service_Genomics_GetIamPolicyRequest:: (0 methods):
Google_Service_Genomics_ImportReadGroupSetsRequest:: (8 methods):
setDatasetId()
getDatasetId()
setPartitionStrategy()
getPartitionStrategy()
setReferenceSetId()
getReferenceSetId()
setSourceUris()
getSourceUris()
Google_Service_Genomics_ImportReadGroupSetsResponse:: (2 methods):
setReadGroupSetIds()
getReadGroupSetIds()
Google_Service_Genomics_ImportVariantsRequest:: (8 methods):
setFormat()
getFormat()
setNormalizeReferenceNames()
getNormalizeReferenceNames()
setSourceUris()
getSourceUris()
setVariantSetId()
getVariantSetId()
Google_Service_Genomics_ImportVariantsResponse:: (2 methods):
setCallSetIds()
getCallSetIds()
Google_Service_Genomics_LinearAlignment:: (6 methods):
setCigar()
getCigar()
setMappingQuality()
getMappingQuality()
setPosition()
getPosition()
Google_Service_Genomics_ListBasesResponse:: (6 methods):
setNextPageToken()
getNextPageToken()
setOffset()
getOffset()
setSequence()
getSequence()
Google_Service_Genomics_ListCoverageBucketsResponse:: (6 methods):
setBucketWidth()
getBucketWidth()
setCoverageBuckets()
getCoverageBuckets()
setNextPageToken()
getNextPageToken()
Google_Service_Genomics_ListDatasetsResponse:: (4 methods):
setDatasets()
getDatasets()
setNextPageToken()
getNextPageToken()
Google_Service_Genomics_ListOperationsResponse:: (4 methods):
setNextPageToken()
getNextPageToken()
setOperations()
getOperations()
Google_Service_Genomics_Operation:: (10 methods):
setDone()
getDone()
setError()
getError()
setMetadata()
getMetadata()
setName()
getName()
setResponse()
getResponse()
Google_Service_Genomics_OperationEvent:: (2 methods):
setDescription()
getDescription()
Google_Service_Genomics_OperationMetadata:: (8 methods):
setCreateTime()
getCreateTime()
setEvents()
getEvents()
setProjectId()
getProjectId()
setRequest()
getRequest()
Google_Service_Genomics_OperationMetadataRequest:: (0 methods):
Google_Service_Genomics_OperationResponse:: (0 methods):
Google_Service_Genomics_Policy:: (6 methods):
setBindings()
getBindings()
setEtag()
getEtag()
setVersion()
getVersion()
Google_Service_Genomics_Position:: (6 methods):
setPosition()
getPosition()
setReferenceName()
getReferenceName()
setReverseStrand()
getReverseStrand()
Google_Service_Genomics_Program:: (10 methods):
setCommandLine()
getCommandLine()
setId()
getId()
setName()
getName()
setPrevProgramId()
getPrevProgramId()
setVersion()
getVersion()
Google_Service_Genomics_Range:: (6 methods):
setEnd()
getEnd()
setReferenceName()
getReferenceName()
setStart()
getStart()
Google_Service_Genomics_Read:: (34 methods):
setAlignedQuality()
getAlignedQuality()
setAlignedSequence()
getAlignedSequence()
setAlignment()
getAlignment()
setDuplicateFragment()
getDuplicateFragment()
setFailedVendorQualityChecks()
getFailedVendorQualityChecks()
setFragmentLength()
getFragmentLength()
setFragmentName()
getFragmentName()
setId()
getId()
setInfo()
getInfo()
setNextMatePosition()
getNextMatePosition()
setNumberReads()
getNumberReads()
setProperPlacement()
getProperPlacement()
setReadGroupId()
getReadGroupId()
setReadGroupSetId()
getReadGroupSetId()
setReadNumber()
getReadNumber()
setSecondaryAlignment()
getSecondaryAlignment()
setSupplementaryAlignment()
getSupplementaryAlignment()
Google_Service_Genomics_ReadGroup:: (20 methods):
setDatasetId()
getDatasetId()
setDescription()
getDescription()
setExperiment()
getExperiment()
setId()
getId()
setInfo()
getInfo()
setName()
getName()
setPredictedInsertSize()
getPredictedInsertSize()
setPrograms()
getPrograms()
setReferenceSetId()
getReferenceSetId()
setSampleId()
getSampleId()
Google_Service_Genomics_ReadGroupInfo:: (0 methods):
Google_Service_Genomics_ReadGroupSet:: (14 methods):
setDatasetId()
getDatasetId()
setFilename()
getFilename()
setId()
getId()
setInfo()
getInfo()
setName()
getName()
setReadGroups()
getReadGroups()
setReferenceSetId()
getReferenceSetId()
Google_Service_Genomics_ReadGroupSetInfo:: (0 methods):
Google_Service_Genomics_ReadInfo:: (0 methods):
Google_Service_Genomics_Reference:: (14 methods):
setId()
getId()
setLength()
getLength()
setMd5checksum()
getMd5checksum()
setName()
getName()
setNcbiTaxonId()
getNcbiTaxonId()
setSourceAccessions()
getSourceAccessions()
setSourceUri()
getSourceUri()
Google_Service_Genomics_ReferenceBound:: (4 methods):
setReferenceName()
getReferenceName()
setUpperBound()
getUpperBound()
Google_Service_Genomics_ReferenceSet:: (16 methods):
setAssemblyId()
getAssemblyId()
setDescription()
getDescription()
setId()
getId()
setMd5checksum()
getMd5checksum()
setNcbiTaxonId()
getNcbiTaxonId()
setReferenceIds()
getReferenceIds()
setSourceAccessions()
getSourceAccessions()
setSourceUri()
getSourceUri()
Google_Service_Genomics_SearchCallSetsRequest:: (8 methods):
setName()
getName()
setPageSize()
getPageSize()
setPageToken()
getPageToken()
setVariantSetIds()
getVariantSetIds()
Google_Service_Genomics_SearchCallSetsResponse:: (4 methods):
setCallSets()
getCallSets()
setNextPageToken()
getNextPageToken()
Google_Service_Genomics_SearchReadGroupSetsRequest:: (8 methods):
setDatasetIds()
getDatasetIds()
setName()
getName()
setPageSize()
getPageSize()
setPageToken()
getPageToken()
Google_Service_Genomics_SearchReadGroupSetsResponse:: (4 methods):
setNextPageToken()
getNextPageToken()
setReadGroupSets()
getReadGroupSets()
Google_Service_Genomics_SearchReadsRequest:: (14 methods):
setEnd()
getEnd()
setPageSize()
getPageSize()
setPageToken()
getPageToken()
setReadGroupIds()
getReadGroupIds()
setReadGroupSetIds()
getReadGroupSetIds()
setReferenceName()
getReferenceName()
setStart()
getStart()
Google_Service_Genomics_SearchReadsResponse:: (4 methods):
setAlignments()
getAlignments()
setNextPageToken()
getNextPageToken()
Google_Service_Genomics_SearchReferenceSetsRequest:: (10 methods):
setAccessions()
getAccessions()
setAssemblyId()
getAssemblyId()
setMd5checksums()
getMd5checksums()
setPageSize()
getPageSize()
setPageToken()
getPageToken()
Google_Service_Genomics_SearchReferenceSetsResponse:: (4 methods):
setNextPageToken()
getNextPageToken()
setReferenceSets()
getReferenceSets()
Google_Service_Genomics_SearchReferencesRequest:: (10 methods):
setAccessions()
getAccessions()
setMd5checksums()
getMd5checksums()
setPageSize()
getPageSize()
setPageToken()
getPageToken()
setReferenceSetId()
getReferenceSetId()
Google_Service_Genomics_SearchReferencesResponse:: (4 methods):
setNextPageToken()
getNextPageToken()
setReferences()
getReferences()
Google_Service_Genomics_SearchVariantSetsRequest:: (6 methods):
setDatasetIds()
getDatasetIds()
setPageSize()
getPageSize()
setPageToken()
getPageToken()
Google_Service_Genomics_SearchVariantSetsResponse:: (4 methods):
setNextPageToken()
getNextPageToken()
setVariantSets()
getVariantSets()
Google_Service_Genomics_SearchVariantsRequest:: (18 methods):
setCallSetIds()
getCallSetIds()
setEnd()
getEnd()
setMaxCalls()
getMaxCalls()
setPageSize()
getPageSize()
setPageToken()
getPageToken()
setReferenceName()
getReferenceName()
setStart()
getStart()
setVariantName()
getVariantName()
setVariantSetIds()
getVariantSetIds()
Google_Service_Genomics_SearchVariantsResponse:: (4 methods):
setNextPageToken()
getNextPageToken()
setVariants()
getVariants()
Google_Service_Genomics_SetIamPolicyRequest:: (2 methods):
setPolicy()
getPolicy()
Google_Service_Genomics_Status:: (6 methods):
setCode()
getCode()
setDetails()
getDetails()
setMessage()
getMessage()
Google_Service_Genomics_StatusDetails:: (0 methods):
Google_Service_Genomics_TestIamPermissionsRequest:: (2 methods):
setPermissions()
getPermissions()
Google_Service_Genomics_TestIamPermissionsResponse:: (2 methods):
setPermissions()
getPermissions()
Google_Service_Genomics_UndeleteDatasetRequest:: (0 methods):
Google_Service_Genomics_Variant:: (26 methods):
setAlternateBases()
getAlternateBases()
setCalls()
getCalls()
setCreated()
getCreated()
setEnd()
getEnd()
setFilter()
getFilter()
setId()
getId()
setInfo()
getInfo()
setNames()
getNames()
setQuality()
getQuality()
setReferenceBases()
getReferenceBases()
setReferenceName()
getReferenceName()
setStart()
getStart()
setVariantSetId()
getVariantSetId()
Google_Service_Genomics_VariantCall:: (12 methods):
setCallSetId()
getCallSetId()
setCallSetName()
getCallSetName()
setGenotype()
getGenotype()
setGenotypeLikelihood()
getGenotypeLikelihood()
setInfo()
getInfo()
setPhaseset()
getPhaseset()
Google_Service_Genomics_VariantCallInfo:: (0 methods):
Google_Service_Genomics_VariantInfo:: (0 methods):
Google_Service_Genomics_VariantSet:: (8 methods):
setDatasetId()
getDatasetId()
setId()
getId()
setMetadata()
getMetadata()
setReferenceBounds()
getReferenceBounds()
Google_Service_Genomics_VariantSetMetadata:: (14 methods):
setDescription()
getDescription()
setId()
getId()
setInfo()
getInfo()
setKey()
getKey()
setNumber()
getNumber()
setType()
getType()
setValue()
getValue()
Google_Service_Genomics_VariantSetMetadataInfo:: (0 methods):
Class: Google_Service_Genomics - X-Ref
Service definition for Genomics (v1).<p>
An API to store, process, explore, and share DNA sequence reads, reference-
based alignments, and variant calls.</p>
<p>
For more information about this service, see the API
<a href="" target="_blank">Documentation</a>
</p>
| __construct(Google_Client $client) X-Ref |
| Constructs the internal representation of the Genomics service. param: Google_Client $client |
Class: Google_Service_Genomics_Callsets_Resource - X-Ref
The "callsets" collection of methods.Typical usage is:
<code>
$genomicsService = new Google_Service_Genomics(...);
$callsets = $genomicsService->callsets;
</code>
| create(Google_Service_Genomics_CallSet $postBody, $optParams = array() X-Ref |
| Creates a new call set. (callsets.create) param: Google_CallSet $postBody param: array $optParams Optional parameters. return: Google_Service_Genomics_CallSet |
| delete($callSetId, $optParams = array() X-Ref |
| Deletes a call set. (callsets.delete) param: string $callSetId The ID of the call set to be deleted. param: array $optParams Optional parameters. return: Google_Service_Genomics_Empty |
| get($callSetId, $optParams = array() X-Ref |
| Gets a call set by ID. (callsets.get) param: string $callSetId The ID of the call set. param: array $optParams Optional parameters. return: Google_Service_Genomics_CallSet |
| patch($callSetId, Google_Service_Genomics_CallSet $postBody, $optParams = array() X-Ref |
| Updates a call set. This method supports patch semantics. (callsets.patch) param: string $callSetId The ID of the call set to be updated. param: Google_CallSet $postBody param: array $optParams Optional parameters. return: Google_Service_Genomics_CallSet |
| search(Google_Service_Genomics_SearchCallSetsRequest $postBody, $optParams = array() X-Ref |
| Gets a list of call sets matching the criteria. Implements [GlobalAllianceApi .searchCallSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resour ces/avro/variantmethods.avdl#L178). (callsets.search) param: Google_SearchCallSetsRequest $postBody param: array $optParams Optional parameters. return: Google_Service_Genomics_SearchCallSetsResponse |
Class: Google_Service_Genomics_Datasets_Resource - X-Ref
The "datasets" collection of methods.Typical usage is:
<code>
$genomicsService = new Google_Service_Genomics(...);
$datasets = $genomicsService->datasets;
</code>
| create(Google_Service_Genomics_Dataset $postBody, $optParams = array() X-Ref |
| Creates a new dataset. (datasets.create) param: Google_Dataset $postBody param: array $optParams Optional parameters. return: Google_Service_Genomics_Dataset |
| delete($datasetId, $optParams = array() X-Ref |
| Deletes a dataset. (datasets.delete) param: string $datasetId The ID of the dataset to be deleted. param: array $optParams Optional parameters. return: Google_Service_Genomics_Empty |
| get($datasetId, $optParams = array() X-Ref |
| Gets a dataset by ID. (datasets.get) param: string $datasetId The ID of the dataset. param: array $optParams Optional parameters. return: Google_Service_Genomics_Dataset |
| getIamPolicy($resource, Google_Service_Genomics_GetIamPolicyRequest $postBody, $optParams = array() X-Ref |
| Gets the access control policy for the dataset. Is empty if the policy or the resource does not exist. See Getting a Policy for more information. (datasets.getIamPolicy) param: string $resource REQUIRED: The resource for which policy is being param: Google_GetIamPolicyRequest $postBody param: array $optParams Optional parameters. return: Google_Service_Genomics_Policy |
| listDatasets($optParams = array() X-Ref |
| Lists datasets within a project. (datasets.listDatasets) param: array $optParams Optional parameters. return: Google_Service_Genomics_ListDatasetsResponse |
| patch($datasetId, Google_Service_Genomics_Dataset $postBody, $optParams = array() X-Ref |
| Updates a dataset. This method supports patch semantics. (datasets.patch) param: string $datasetId The ID of the dataset to be updated. param: Google_Dataset $postBody param: array $optParams Optional parameters. return: Google_Service_Genomics_Dataset |
| setIamPolicy($resource, Google_Service_Genomics_SetIamPolicyRequest $postBody, $optParams = array() X-Ref |
| Sets the access control policy on the specified dataset. Replaces any existing policy. See Setting a Policy for more information. (datasets.setIamPolicy) param: string $resource REQUIRED: The resource for which policy is being param: Google_SetIamPolicyRequest $postBody param: array $optParams Optional parameters. return: Google_Service_Genomics_Policy |
| testIamPermissions($resource, Google_Service_Genomics_TestIamPermissionsRequest $postBody, $optParams = array() X-Ref |
| Returns permissions that a caller has on the specified resource. See Testing Permissions for more information. (datasets.testIamPermissions) param: string $resource REQUIRED: The resource for which policy is being param: Google_TestIamPermissionsRequest $postBody param: array $optParams Optional parameters. return: Google_Service_Genomics_TestIamPermissionsResponse |
| undelete($datasetId, Google_Service_Genomics_UndeleteDatasetRequest $postBody, $optParams = array() X-Ref |
| Undeletes a dataset by restoring a dataset which was deleted via this API. This operation is only possible for a week after the deletion occurred. (datasets.undelete) param: string $datasetId The ID of the dataset to be undeleted. param: Google_UndeleteDatasetRequest $postBody param: array $optParams Optional parameters. return: Google_Service_Genomics_Dataset |
Class: Google_Service_Genomics_Operations_Resource - X-Ref
The "operations" collection of methods.Typical usage is:
<code>
$genomicsService = new Google_Service_Genomics(...);
$operations = $genomicsService->operations;
</code>
| cancel($name, Google_Service_Genomics_CancelOperationRequest $postBody, $optParams = array() X-Ref |
| Starts asynchronous cancellation on a long-running operation. The server makes a best effort to cancel the operation, but success is not guaranteed. Clients may use Operations.GetOperation or Operations.ListOperations to check whether the cancellation succeeded or the operation completed despite cancellation. (operations.cancel) param: string $name The name of the operation resource to be cancelled. param: Google_CancelOperationRequest $postBody param: array $optParams Optional parameters. return: Google_Service_Genomics_Empty |
| delete($name, $optParams = array() X-Ref |
| This method is not implemented. To cancel an operation, please use Operations.CancelOperation. (operations.delete) param: string $name The name of the operation resource to be deleted. param: array $optParams Optional parameters. return: Google_Service_Genomics_Empty |
| get($name, $optParams = array() X-Ref |
| Gets the latest state of a long-running operation. Clients can use this method to poll the operation result at intervals as recommended by the API service. (operations.get) param: string $name The name of the operation resource. param: array $optParams Optional parameters. return: Google_Service_Genomics_Operation |
| listOperations($name, $optParams = array() X-Ref |
| Lists operations that match the specified filter in the request. (operations.listOperations) param: string $name The name of the operation collection. param: array $optParams Optional parameters. return: Google_Service_Genomics_ListOperationsResponse |
Class: Google_Service_Genomics_Readgroupsets_Resource - X-Ref
The "readgroupsets" collection of methods.Typical usage is:
<code>
$genomicsService = new Google_Service_Genomics(...);
$readgroupsets = $genomicsService->readgroupsets;
</code>
| delete($readGroupSetId, $optParams = array() X-Ref |
| Deletes a read group set. (readgroupsets.delete) param: string $readGroupSetId The ID of the read group set to be deleted. The param: array $optParams Optional parameters. return: Google_Service_Genomics_Empty |
| export($readGroupSetId, Google_Service_Genomics_ExportReadGroupSetRequest $postBody, $optParams = array() X-Ref |
| Exports a read group set to a BAM file in Google Cloud Storage. Note that currently there may be some differences between exported BAM files and the original BAM file at the time of import. See [ImportReadGroupSets](google.genomics.v1.ReadServiceV1.ImportReadGroupSets) for caveats. (readgroupsets.export) param: string $readGroupSetId Required. The ID of the read group set to param: Google_ExportReadGroupSetRequest $postBody param: array $optParams Optional parameters. return: Google_Service_Genomics_Operation |
| get($readGroupSetId, $optParams = array() X-Ref |
| Gets a read group set by ID. (readgroupsets.get) param: string $readGroupSetId The ID of the read group set. param: array $optParams Optional parameters. return: Google_Service_Genomics_ReadGroupSet |
| import(Google_Service_Genomics_ImportReadGroupSetsRequest $postBody, $optParams = array() X-Ref |
| Creates read group sets by asynchronously importing the provided information. The caller must have WRITE permissions to the dataset. ## Notes on [BAM](https://samtools.github.io/hts-specs/SAMv1.pdf) import - Tags will be converted to strings - tag types are not preserved - Comments (`@CO`) in the input file header will not be preserved - Original header order of references (`@SQ`) will not be preserved - Any reverse stranded unmapped reads will be reverse complemented, and their qualities (and "BQ" tag, if any) will be reversed - Unmapped reads will be stripped of positional information (reference name and position) (readgroupsets.import) param: Google_ImportReadGroupSetsRequest $postBody param: array $optParams Optional parameters. return: Google_Service_Genomics_Operation |
| patch($readGroupSetId, Google_Service_Genomics_ReadGroupSet $postBody, $optParams = array() X-Ref |
| Updates a read group set. This method supports patch semantics. (readgroupsets.patch) param: string $readGroupSetId The ID of the read group set to be updated. The param: Google_ReadGroupSet $postBody param: array $optParams Optional parameters. return: Google_Service_Genomics_ReadGroupSet |
| search(Google_Service_Genomics_SearchReadGroupSetsRequest $postBody, $optParams = array() X-Ref |
| Searches for read group sets matching the criteria. Implements [GlobalAllianc eApi.searchReadGroupSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/ma in/resources/avro/readmethods.avdl#L135). (readgroupsets.search) param: Google_SearchReadGroupSetsRequest $postBody param: array $optParams Optional parameters. return: Google_Service_Genomics_SearchReadGroupSetsResponse |
Class: Google_Service_Genomics_ReadgroupsetsCoveragebuckets_Resource - X-Ref
The "coveragebuckets" collection of methods.Typical usage is:
<code>
$genomicsService = new Google_Service_Genomics(...);
$coveragebuckets = $genomicsService->coveragebuckets;
</code>
| listReadgroupsetsCoveragebuckets($readGroupSetId, $optParams = array() X-Ref |
| Lists fixed width coverage buckets for a read group set, each of which correspond to a range of a reference sequence. Each bucket summarizes coverage information across its corresponding genomic range. Coverage is defined as the number of reads which are aligned to a given base in the reference sequence. Coverage buckets are available at several precomputed bucket widths, enabling retrieval of various coverage 'zoom levels'. The caller must have READ permissions for the target read group set. (coveragebuckets.listReadgroupsetsCoveragebuckets) param: string $readGroupSetId Required. The ID of the read group set over param: array $optParams Optional parameters. return: Google_Service_Genomics_ListCoverageBucketsResponse |
Class: Google_Service_Genomics_Reads_Resource - X-Ref
The "reads" collection of methods.Typical usage is:
<code>
$genomicsService = new Google_Service_Genomics(...);
$reads = $genomicsService->reads;
</code>
| search(Google_Service_Genomics_SearchReadsRequest $postBody, $optParams = array() X-Ref |
| Gets a list of reads for one or more read group sets. Reads search operates over a genomic coordinate space of reference sequence & position defined over the reference sequences to which the requested read group sets are aligned. If a target positional range is specified, search returns all reads whose alignment to the reference genome overlap the range. A query which specifies only read group set IDs yields all reads in those read group sets, including unmapped reads. All reads returned (including reads on subsequent pages) are ordered by genomic coordinate (reference sequence & position). Reads with equivalent genomic coordinates are returned in a deterministic order. Implements [GlobalAllianceApi.searchReads](https://github.com/ga4gh/schemas/b lob/v0.5.1/src/main/resources/avro/readmethods.avdl#L85). (reads.search) param: Google_SearchReadsRequest $postBody param: array $optParams Optional parameters. return: Google_Service_Genomics_SearchReadsResponse |
Class: Google_Service_Genomics_References_Resource - X-Ref
The "references" collection of methods.Typical usage is:
<code>
$genomicsService = new Google_Service_Genomics(...);
$references = $genomicsService->references;
</code>
| get($referenceId, $optParams = array() X-Ref |
| Gets a reference. Implements [GlobalAllianceApi.getReference](https://github. com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L 158). (references.get) param: string $referenceId The ID of the reference. param: array $optParams Optional parameters. return: Google_Service_Genomics_Reference |
| search(Google_Service_Genomics_SearchReferencesRequest $postBody, $optParams = array() X-Ref |
| Searches for references which match the given criteria. Implements [GlobalAll ianceApi.searchReferences](https://github.com/ga4gh/schemas/blob/v0.5.1/src/m ain/resources/avro/referencemethods.avdl#L146). (references.search) param: Google_SearchReferencesRequest $postBody param: array $optParams Optional parameters. return: Google_Service_Genomics_SearchReferencesResponse |
Class: Google_Service_Genomics_ReferencesBases_Resource - X-Ref
The "bases" collection of methods.Typical usage is:
<code>
$genomicsService = new Google_Service_Genomics(...);
$bases = $genomicsService->bases;
</code>
| listReferencesBases($referenceId, $optParams = array() X-Ref |
| Lists the bases in a reference, optionally restricted to a range. Implements [GlobalAllianceApi.getReferenceBases](https://github.com/ga4gh/schemas/blob/v 0.5.1/src/main/resources/avro/referencemethods.avdl#L221). (bases.listReferencesBases) param: string $referenceId The ID of the reference. param: array $optParams Optional parameters. return: Google_Service_Genomics_ListBasesResponse |
Class: Google_Service_Genomics_Referencesets_Resource - X-Ref
The "referencesets" collection of methods.Typical usage is:
<code>
$genomicsService = new Google_Service_Genomics(...);
$referencesets = $genomicsService->referencesets;
</code>
| get($referenceSetId, $optParams = array() X-Ref |
| Gets a reference set. Implements [GlobalAllianceApi.getReferenceSet](https:// github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods .avdl#L83). (referencesets.get) param: string $referenceSetId The ID of the reference set. param: array $optParams Optional parameters. return: Google_Service_Genomics_ReferenceSet |
| search(Google_Service_Genomics_SearchReferenceSetsRequest $postBody, $optParams = array() X-Ref |
| Searches for reference sets which match the given criteria. Implements [Globa lAllianceApi.searchReferenceSets](http://ga4gh.org/documentation/api/v0.5.1/g a4gh_api.html#/schema/org.ga4gh.searchReferenceSets). (referencesets.search) param: Google_SearchReferenceSetsRequest $postBody param: array $optParams Optional parameters. return: Google_Service_Genomics_SearchReferenceSetsResponse |
Class: Google_Service_Genomics_Variants_Resource - X-Ref
The "variants" collection of methods.Typical usage is:
<code>
$genomicsService = new Google_Service_Genomics(...);
$variants = $genomicsService->variants;
</code>
| create(Google_Service_Genomics_Variant $postBody, $optParams = array() X-Ref |
| Creates a new variant. (variants.create) param: Google_Variant $postBody param: array $optParams Optional parameters. return: Google_Service_Genomics_Variant |
| delete($variantId, $optParams = array() X-Ref |
| Deletes a variant. (variants.delete) param: string $variantId The ID of the variant to be deleted. param: array $optParams Optional parameters. return: Google_Service_Genomics_Empty |
| get($variantId, $optParams = array() X-Ref |
| Gets a variant by ID. (variants.get) param: string $variantId The ID of the variant. param: array $optParams Optional parameters. return: Google_Service_Genomics_Variant |
| import(Google_Service_Genomics_ImportVariantsRequest $postBody, $optParams = array() X-Ref |
| Creates variant data by asynchronously importing the provided information. The variants for import will be merged with any existing variant that matches its reference sequence, start, end, reference bases, and alternative bases. If no such variant exists, a new one will be created. When variants are merged, the call information from the new variant is added to the existing variant, and other fields (such as key/value pairs) are discarded. In particular, this means for merged VCF variants that have conflicting INFO fields, some data will be arbitrarily discarded. As a special case, for single-sample VCF files, QUAL and FILTER fields will be moved to the call level; these are sometimes interpreted in a call-specific context. Imported VCF headers are appended to the metadata already in a variant set. (variants.import) param: Google_ImportVariantsRequest $postBody param: array $optParams Optional parameters. return: Google_Service_Genomics_Operation |
| patch($variantId, Google_Service_Genomics_Variant $postBody, $optParams = array() X-Ref |
| Updates a variant. This method supports patch semantics. Returns the modified variant without its calls. (variants.patch) param: string $variantId The ID of the variant to be updated. param: Google_Variant $postBody param: array $optParams Optional parameters. return: Google_Service_Genomics_Variant |
| search(Google_Service_Genomics_SearchVariantsRequest $postBody, $optParams = array() X-Ref |
| Gets a list of variants matching the criteria. Implements [GlobalAllianceApi. searchVariants](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resourc es/avro/variantmethods.avdl#L126). (variants.search) param: Google_SearchVariantsRequest $postBody param: array $optParams Optional parameters. return: Google_Service_Genomics_SearchVariantsResponse |
Class: Google_Service_Genomics_Variantsets_Resource - X-Ref
The "variantsets" collection of methods.Typical usage is:
<code>
$genomicsService = new Google_Service_Genomics(...);
$variantsets = $genomicsService->variantsets;
</code>
| create(Google_Service_Genomics_VariantSet $postBody, $optParams = array() X-Ref |
| Creates a new variant set. The provided variant set must have a valid `datasetId` set - all other fields are optional. Note that the `id` field will be ignored, as this is assigned by the server. (variantsets.create) param: Google_VariantSet $postBody param: array $optParams Optional parameters. return: Google_Service_Genomics_VariantSet |
| delete($variantSetId, $optParams = array() X-Ref |
| Deletes the contents of a variant set. The variant set object is not deleted. (variantsets.delete) param: string $variantSetId The ID of the variant set to be deleted. param: array $optParams Optional parameters. return: Google_Service_Genomics_Empty |
| export($variantSetId, Google_Service_Genomics_ExportVariantSetRequest $postBody, $optParams = array() X-Ref |
| Exports variant set data to an external destination. (variantsets.export) param: string $variantSetId Required. The ID of the variant set that contains param: Google_ExportVariantSetRequest $postBody param: array $optParams Optional parameters. return: Google_Service_Genomics_Operation |
| get($variantSetId, $optParams = array() X-Ref |
| Gets a variant set by ID. (variantsets.get) param: string $variantSetId Required. The ID of the variant set. param: array $optParams Optional parameters. return: Google_Service_Genomics_VariantSet |
| patch($variantSetId, Google_Service_Genomics_VariantSet $postBody, $optParams = array() X-Ref |
| Updates a variant set. This method supports patch semantics. (variantsets.patch) param: string $variantSetId The ID of the variant to be updated (must already param: Google_VariantSet $postBody param: array $optParams Optional parameters. return: Google_Service_Genomics_VariantSet |
| search(Google_Service_Genomics_SearchVariantSetsRequest $postBody, $optParams = array() X-Ref |
| Returns a list of all variant sets matching search criteria. Implements [Glob alAllianceApi.searchVariantSets](https://github.com/ga4gh/schemas/blob/v0.5.1 /src/main/resources/avro/variantmethods.avdl#L49). (variantsets.search) param: Google_SearchVariantSetsRequest $postBody param: array $optParams Optional parameters. return: Google_Service_Genomics_SearchVariantSetsResponse |
Class: Google_Service_Genomics_Binding - X-Ref
| setMembers($members) X-Ref |
| No description |
| getMembers() X-Ref |
| No description |
| setRole($role) X-Ref |
| No description |
| getRole() X-Ref |
| No description |
Class: Google_Service_Genomics_CallSet - X-Ref
| setCreated($created) X-Ref |
| No description |
| getCreated() X-Ref |
| No description |
| setId($id) X-Ref |
| No description |
| getId() X-Ref |
| No description |
| setInfo($info) X-Ref |
| No description |
| getInfo() X-Ref |
| No description |
| setName($name) X-Ref |
| No description |
| getName() X-Ref |
| No description |
| setSampleId($sampleId) X-Ref |
| No description |
| getSampleId() X-Ref |
| No description |
| setVariantSetIds($variantSetIds) X-Ref |
| No description |
| getVariantSetIds() X-Ref |
| No description |
Class: Google_Service_Genomics_CallSetInfo - X-Ref
Class: Google_Service_Genomics_CigarUnit - X-Ref
| setOperation($operation) X-Ref |
| No description |
| getOperation() X-Ref |
| No description |
| setOperationLength($operationLength) X-Ref |
| No description |
| getOperationLength() X-Ref |
| No description |
| setReferenceSequence($referenceSequence) X-Ref |
| No description |
| getReferenceSequence() X-Ref |
| No description |
Class: Google_Service_Genomics_CoverageBucket - X-Ref
| setMeanCoverage($meanCoverage) X-Ref |
| No description |
| getMeanCoverage() X-Ref |
| No description |
| setRange(Google_Service_Genomics_Range $range) X-Ref |
| No description |
| getRange() X-Ref |
| No description |
Class: Google_Service_Genomics_Dataset - X-Ref
| setCreateTime($createTime) X-Ref |
| No description |
| getCreateTime() X-Ref |
| No description |
| setId($id) X-Ref |
| No description |
| getId() X-Ref |
| No description |
| setName($name) X-Ref |
| No description |
| getName() X-Ref |
| No description |
| setProjectId($projectId) X-Ref |
| No description |
| getProjectId() X-Ref |
| No description |
Class: Google_Service_Genomics_Empty - X-Ref
Class: Google_Service_Genomics_Experiment - X-Ref
| setInstrumentModel($instrumentModel) X-Ref |
| No description |
| getInstrumentModel() X-Ref |
| No description |
| setLibraryId($libraryId) X-Ref |
| No description |
| getLibraryId() X-Ref |
| No description |
| setPlatformUnit($platformUnit) X-Ref |
| No description |
| getPlatformUnit() X-Ref |
| No description |
| setSequencingCenter($sequencingCenter) X-Ref |
| No description |
| getSequencingCenter() X-Ref |
| No description |
Class: Google_Service_Genomics_ExportReadGroupSetRequest - X-Ref
| setExportUri($exportUri) X-Ref |
| No description |
| getExportUri() X-Ref |
| No description |
| setProjectId($projectId) X-Ref |
| No description |
| getProjectId() X-Ref |
| No description |
| setReferenceNames($referenceNames) X-Ref |
| No description |
| getReferenceNames() X-Ref |
| No description |
Class: Google_Service_Genomics_ExportVariantSetRequest - X-Ref
| setBigqueryDataset($bigqueryDataset) X-Ref |
| No description |
| getBigqueryDataset() X-Ref |
| No description |
| setBigqueryTable($bigqueryTable) X-Ref |
| No description |
| getBigqueryTable() X-Ref |
| No description |
| setCallSetIds($callSetIds) X-Ref |
| No description |
| getCallSetIds() X-Ref |
| No description |
| setFormat($format) X-Ref |
| No description |
| getFormat() X-Ref |
| No description |
| setProjectId($projectId) X-Ref |
| No description |
| getProjectId() X-Ref |
| No description |
Class: Google_Service_Genomics_ImportReadGroupSetsRequest - X-Ref
| setDatasetId($datasetId) X-Ref |
| No description |
| getDatasetId() X-Ref |
| No description |
| setPartitionStrategy($partitionStrategy) X-Ref |
| No description |
| getPartitionStrategy() X-Ref |
| No description |
| setReferenceSetId($referenceSetId) X-Ref |
| No description |
| getReferenceSetId() X-Ref |
| No description |
| setSourceUris($sourceUris) X-Ref |
| No description |
| getSourceUris() X-Ref |
| No description |
Class: Google_Service_Genomics_ImportVariantsRequest - X-Ref
| setFormat($format) X-Ref |
| No description |
| getFormat() X-Ref |
| No description |
| setNormalizeReferenceNames($normalizeReferenceNames) X-Ref |
| No description |
| getNormalizeReferenceNames() X-Ref |
| No description |
| setSourceUris($sourceUris) X-Ref |
| No description |
| getSourceUris() X-Ref |
| No description |
| setVariantSetId($variantSetId) X-Ref |
| No description |
| getVariantSetId() X-Ref |
| No description |
Class: Google_Service_Genomics_LinearAlignment - X-Ref
| setCigar($cigar) X-Ref |
| No description |
| getCigar() X-Ref |
| No description |
| setMappingQuality($mappingQuality) X-Ref |
| No description |
| getMappingQuality() X-Ref |
| No description |
| setPosition(Google_Service_Genomics_Position $position) X-Ref |
| No description |
| getPosition() X-Ref |
| No description |
Class: Google_Service_Genomics_ListBasesResponse - X-Ref
| setNextPageToken($nextPageToken) X-Ref |
| No description |
| getNextPageToken() X-Ref |
| No description |
| setOffset($offset) X-Ref |
| No description |
| getOffset() X-Ref |
| No description |
| setSequence($sequence) X-Ref |
| No description |
| getSequence() X-Ref |
| No description |
Class: Google_Service_Genomics_ListCoverageBucketsResponse - X-Ref
| setBucketWidth($bucketWidth) X-Ref |
| No description |
| getBucketWidth() X-Ref |
| No description |
| setCoverageBuckets($coverageBuckets) X-Ref |
| No description |
| getCoverageBuckets() X-Ref |
| No description |
| setNextPageToken($nextPageToken) X-Ref |
| No description |
| getNextPageToken() X-Ref |
| No description |
Class: Google_Service_Genomics_ListDatasetsResponse - X-Ref
| setDatasets($datasets) X-Ref |
| No description |
| getDatasets() X-Ref |
| No description |
| setNextPageToken($nextPageToken) X-Ref |
| No description |
| getNextPageToken() X-Ref |
| No description |
Class: Google_Service_Genomics_ListOperationsResponse - X-Ref
| setNextPageToken($nextPageToken) X-Ref |
| No description |
| getNextPageToken() X-Ref |
| No description |
| setOperations($operations) X-Ref |
| No description |
| getOperations() X-Ref |
| No description |
Class: Google_Service_Genomics_Operation - X-Ref
| setDone($done) X-Ref |
| No description |
| getDone() X-Ref |
| No description |
| setError(Google_Service_Genomics_Status $error) X-Ref |
| No description |
| getError() X-Ref |
| No description |
| setMetadata($metadata) X-Ref |
| No description |
| getMetadata() X-Ref |
| No description |
| setName($name) X-Ref |
| No description |
| getName() X-Ref |
| No description |
| setResponse($response) X-Ref |
| No description |
| getResponse() X-Ref |
| No description |
Class: Google_Service_Genomics_OperationMetadata - X-Ref
| setCreateTime($createTime) X-Ref |
| No description |
| getCreateTime() X-Ref |
| No description |
| setEvents($events) X-Ref |
| No description |
| getEvents() X-Ref |
| No description |
| setProjectId($projectId) X-Ref |
| No description |
| getProjectId() X-Ref |
| No description |
| setRequest($request) X-Ref |
| No description |
| getRequest() X-Ref |
| No description |
Class: Google_Service_Genomics_Policy - X-Ref
| setBindings($bindings) X-Ref |
| No description |
| getBindings() X-Ref |
| No description |
| setEtag($etag) X-Ref |
| No description |
| getEtag() X-Ref |
| No description |
| setVersion($version) X-Ref |
| No description |
| getVersion() X-Ref |
| No description |
Class: Google_Service_Genomics_Position - X-Ref
| setPosition($position) X-Ref |
| No description |
| getPosition() X-Ref |
| No description |
| setReferenceName($referenceName) X-Ref |
| No description |
| getReferenceName() X-Ref |
| No description |
| setReverseStrand($reverseStrand) X-Ref |
| No description |
| getReverseStrand() X-Ref |
| No description |
Class: Google_Service_Genomics_Program - X-Ref
| setCommandLine($commandLine) X-Ref |
| No description |
| getCommandLine() X-Ref |
| No description |
| setId($id) X-Ref |
| No description |
| getId() X-Ref |
| No description |
| setName($name) X-Ref |
| No description |
| getName() X-Ref |
| No description |
| setPrevProgramId($prevProgramId) X-Ref |
| No description |
| getPrevProgramId() X-Ref |
| No description |
| setVersion($version) X-Ref |
| No description |
| getVersion() X-Ref |
| No description |
Class: Google_Service_Genomics_Range - X-Ref
| setEnd($end) X-Ref |
| No description |
| getEnd() X-Ref |
| No description |
| setReferenceName($referenceName) X-Ref |
| No description |
| getReferenceName() X-Ref |
| No description |
| setStart($start) X-Ref |
| No description |
| getStart() X-Ref |
| No description |
Class: Google_Service_Genomics_Read - X-Ref
| setAlignedQuality($alignedQuality) X-Ref |
| No description |
| getAlignedQuality() X-Ref |
| No description |
| setAlignedSequence($alignedSequence) X-Ref |
| No description |
| getAlignedSequence() X-Ref |
| No description |
| setAlignment(Google_Service_Genomics_LinearAlignment $alignment) X-Ref |
| No description |
| getAlignment() X-Ref |
| No description |
| setDuplicateFragment($duplicateFragment) X-Ref |
| No description |
| getDuplicateFragment() X-Ref |
| No description |
| setFailedVendorQualityChecks($failedVendorQualityChecks) X-Ref |
| No description |
| getFailedVendorQualityChecks() X-Ref |
| No description |
| setFragmentLength($fragmentLength) X-Ref |
| No description |
| getFragmentLength() X-Ref |
| No description |
| setFragmentName($fragmentName) X-Ref |
| No description |
| getFragmentName() X-Ref |
| No description |
| setId($id) X-Ref |
| No description |
| getId() X-Ref |
| No description |
| setInfo($info) X-Ref |
| No description |
| getInfo() X-Ref |
| No description |
| setNextMatePosition(Google_Service_Genomics_Position $nextMatePosition) X-Ref |
| No description |
| getNextMatePosition() X-Ref |
| No description |
| setNumberReads($numberReads) X-Ref |
| No description |
| getNumberReads() X-Ref |
| No description |
| setProperPlacement($properPlacement) X-Ref |
| No description |
| getProperPlacement() X-Ref |
| No description |
| setReadGroupId($readGroupId) X-Ref |
| No description |
| getReadGroupId() X-Ref |
| No description |
| setReadGroupSetId($readGroupSetId) X-Ref |
| No description |
| getReadGroupSetId() X-Ref |
| No description |
| setReadNumber($readNumber) X-Ref |
| No description |
| getReadNumber() X-Ref |
| No description |
| setSecondaryAlignment($secondaryAlignment) X-Ref |
| No description |
| getSecondaryAlignment() X-Ref |
| No description |
| setSupplementaryAlignment($supplementaryAlignment) X-Ref |
| No description |
| getSupplementaryAlignment() X-Ref |
| No description |
Class: Google_Service_Genomics_ReadGroup - X-Ref
| setDatasetId($datasetId) X-Ref |
| No description |
| getDatasetId() X-Ref |
| No description |
| setDescription($description) X-Ref |
| No description |
| getDescription() X-Ref |
| No description |
| setExperiment(Google_Service_Genomics_Experiment $experiment) X-Ref |
| No description |
| getExperiment() X-Ref |
| No description |
| setId($id) X-Ref |
| No description |
| getId() X-Ref |
| No description |
| setInfo($info) X-Ref |
| No description |
| getInfo() X-Ref |
| No description |
| setName($name) X-Ref |
| No description |
| getName() X-Ref |
| No description |
| setPredictedInsertSize($predictedInsertSize) X-Ref |
| No description |
| getPredictedInsertSize() X-Ref |
| No description |
| setPrograms($programs) X-Ref |
| No description |
| getPrograms() X-Ref |
| No description |
| setReferenceSetId($referenceSetId) X-Ref |
| No description |
| getReferenceSetId() X-Ref |
| No description |
| setSampleId($sampleId) X-Ref |
| No description |
| getSampleId() X-Ref |
| No description |
Class: Google_Service_Genomics_ReadGroupSet - X-Ref
| setDatasetId($datasetId) X-Ref |
| No description |
| getDatasetId() X-Ref |
| No description |
| setFilename($filename) X-Ref |
| No description |
| getFilename() X-Ref |
| No description |
| setId($id) X-Ref |
| No description |
| getId() X-Ref |
| No description |
| setInfo($info) X-Ref |
| No description |
| getInfo() X-Ref |
| No description |
| setName($name) X-Ref |
| No description |
| getName() X-Ref |
| No description |
| setReadGroups($readGroups) X-Ref |
| No description |
| getReadGroups() X-Ref |
| No description |
| setReferenceSetId($referenceSetId) X-Ref |
| No description |
| getReferenceSetId() X-Ref |
| No description |
Class: Google_Service_Genomics_ReadInfo - X-Ref
Class: Google_Service_Genomics_Reference - X-Ref
| setId($id) X-Ref |
| No description |
| getId() X-Ref |
| No description |
| setLength($length) X-Ref |
| No description |
| getLength() X-Ref |
| No description |
| setMd5checksum($md5checksum) X-Ref |
| No description |
| getMd5checksum() X-Ref |
| No description |
| setName($name) X-Ref |
| No description |
| getName() X-Ref |
| No description |
| setNcbiTaxonId($ncbiTaxonId) X-Ref |
| No description |
| getNcbiTaxonId() X-Ref |
| No description |
| setSourceAccessions($sourceAccessions) X-Ref |
| No description |
| getSourceAccessions() X-Ref |
| No description |
| setSourceUri($sourceUri) X-Ref |
| No description |
| getSourceUri() X-Ref |
| No description |
Class: Google_Service_Genomics_ReferenceBound - X-Ref
| setReferenceName($referenceName) X-Ref |
| No description |
| getReferenceName() X-Ref |
| No description |
| setUpperBound($upperBound) X-Ref |
| No description |
| getUpperBound() X-Ref |
| No description |
Class: Google_Service_Genomics_ReferenceSet - X-Ref
| setAssemblyId($assemblyId) X-Ref |
| No description |
| getAssemblyId() X-Ref |
| No description |
| setDescription($description) X-Ref |
| No description |
| getDescription() X-Ref |
| No description |
| setId($id) X-Ref |
| No description |
| getId() X-Ref |
| No description |
| setMd5checksum($md5checksum) X-Ref |
| No description |
| getMd5checksum() X-Ref |
| No description |
| setNcbiTaxonId($ncbiTaxonId) X-Ref |
| No description |
| getNcbiTaxonId() X-Ref |
| No description |
| setReferenceIds($referenceIds) X-Ref |
| No description |
| getReferenceIds() X-Ref |
| No description |
| setSourceAccessions($sourceAccessions) X-Ref |
| No description |
| getSourceAccessions() X-Ref |
| No description |
| setSourceUri($sourceUri) X-Ref |
| No description |
| getSourceUri() X-Ref |
| No description |
Class: Google_Service_Genomics_SearchCallSetsRequest - X-Ref
| setName($name) X-Ref |
| No description |
| getName() X-Ref |
| No description |
| setPageSize($pageSize) X-Ref |
| No description |
| getPageSize() X-Ref |
| No description |
| setPageToken($pageToken) X-Ref |
| No description |
| getPageToken() X-Ref |
| No description |
| setVariantSetIds($variantSetIds) X-Ref |
| No description |
| getVariantSetIds() X-Ref |
| No description |
Class: Google_Service_Genomics_SearchCallSetsResponse - X-Ref
| setCallSets($callSets) X-Ref |
| No description |
| getCallSets() X-Ref |
| No description |
| setNextPageToken($nextPageToken) X-Ref |
| No description |
| getNextPageToken() X-Ref |
| No description |
Class: Google_Service_Genomics_SearchReadGroupSetsRequest - X-Ref
| setDatasetIds($datasetIds) X-Ref |
| No description |
| getDatasetIds() X-Ref |
| No description |
| setName($name) X-Ref |
| No description |
| getName() X-Ref |
| No description |
| setPageSize($pageSize) X-Ref |
| No description |
| getPageSize() X-Ref |
| No description |
| setPageToken($pageToken) X-Ref |
| No description |
| getPageToken() X-Ref |
| No description |
Class: Google_Service_Genomics_SearchReadGroupSetsResponse - X-Ref
| setNextPageToken($nextPageToken) X-Ref |
| No description |
| getNextPageToken() X-Ref |
| No description |
| setReadGroupSets($readGroupSets) X-Ref |
| No description |
| getReadGroupSets() X-Ref |
| No description |
Class: Google_Service_Genomics_SearchReadsRequest - X-Ref
| setEnd($end) X-Ref |
| No description |
| getEnd() X-Ref |
| No description |
| setPageSize($pageSize) X-Ref |
| No description |
| getPageSize() X-Ref |
| No description |
| setPageToken($pageToken) X-Ref |
| No description |
| getPageToken() X-Ref |
| No description |
| setReadGroupIds($readGroupIds) X-Ref |
| No description |
| getReadGroupIds() X-Ref |
| No description |
| setReadGroupSetIds($readGroupSetIds) X-Ref |
| No description |
| getReadGroupSetIds() X-Ref |
| No description |
| setReferenceName($referenceName) X-Ref |
| No description |
| getReferenceName() X-Ref |
| No description |
| setStart($start) X-Ref |
| No description |
| getStart() X-Ref |
| No description |
Class: Google_Service_Genomics_SearchReadsResponse - X-Ref
| setAlignments($alignments) X-Ref |
| No description |
| getAlignments() X-Ref |
| No description |
| setNextPageToken($nextPageToken) X-Ref |
| No description |
| getNextPageToken() X-Ref |
| No description |
Class: Google_Service_Genomics_SearchReferenceSetsRequest - X-Ref
| setAccessions($accessions) X-Ref |
| No description |
| getAccessions() X-Ref |
| No description |
| setAssemblyId($assemblyId) X-Ref |
| No description |
| getAssemblyId() X-Ref |
| No description |
| setMd5checksums($md5checksums) X-Ref |
| No description |
| getMd5checksums() X-Ref |
| No description |
| setPageSize($pageSize) X-Ref |
| No description |
| getPageSize() X-Ref |
| No description |
| setPageToken($pageToken) X-Ref |
| No description |
| getPageToken() X-Ref |
| No description |
Class: Google_Service_Genomics_SearchReferenceSetsResponse - X-Ref
| setNextPageToken($nextPageToken) X-Ref |
| No description |
| getNextPageToken() X-Ref |
| No description |
| setReferenceSets($referenceSets) X-Ref |
| No description |
| getReferenceSets() X-Ref |
| No description |
Class: Google_Service_Genomics_SearchReferencesRequest - X-Ref
| setAccessions($accessions) X-Ref |
| No description |
| getAccessions() X-Ref |
| No description |
| setMd5checksums($md5checksums) X-Ref |
| No description |
| getMd5checksums() X-Ref |
| No description |
| setPageSize($pageSize) X-Ref |
| No description |
| getPageSize() X-Ref |
| No description |
| setPageToken($pageToken) X-Ref |
| No description |
| getPageToken() X-Ref |
| No description |
| setReferenceSetId($referenceSetId) X-Ref |
| No description |
| getReferenceSetId() X-Ref |
| No description |
Class: Google_Service_Genomics_SearchReferencesResponse - X-Ref
| setNextPageToken($nextPageToken) X-Ref |
| No description |
| getNextPageToken() X-Ref |
| No description |
| setReferences($references) X-Ref |
| No description |
| getReferences() X-Ref |
| No description |
Class: Google_Service_Genomics_SearchVariantSetsRequest - X-Ref
| setDatasetIds($datasetIds) X-Ref |
| No description |
| getDatasetIds() X-Ref |
| No description |
| setPageSize($pageSize) X-Ref |
| No description |
| getPageSize() X-Ref |
| No description |
| setPageToken($pageToken) X-Ref |
| No description |
| getPageToken() X-Ref |
| No description |
Class: Google_Service_Genomics_SearchVariantSetsResponse - X-Ref
| setNextPageToken($nextPageToken) X-Ref |
| No description |
| getNextPageToken() X-Ref |
| No description |
| setVariantSets($variantSets) X-Ref |
| No description |
| getVariantSets() X-Ref |
| No description |
Class: Google_Service_Genomics_SearchVariantsRequest - X-Ref
| setCallSetIds($callSetIds) X-Ref |
| No description |
| getCallSetIds() X-Ref |
| No description |
| setEnd($end) X-Ref |
| No description |
| getEnd() X-Ref |
| No description |
| setMaxCalls($maxCalls) X-Ref |
| No description |
| getMaxCalls() X-Ref |
| No description |
| setPageSize($pageSize) X-Ref |
| No description |
| getPageSize() X-Ref |
| No description |
| setPageToken($pageToken) X-Ref |
| No description |
| getPageToken() X-Ref |
| No description |
| setReferenceName($referenceName) X-Ref |
| No description |
| getReferenceName() X-Ref |
| No description |
| setStart($start) X-Ref |
| No description |
| getStart() X-Ref |
| No description |
| setVariantName($variantName) X-Ref |
| No description |
| getVariantName() X-Ref |
| No description |
| setVariantSetIds($variantSetIds) X-Ref |
| No description |
| getVariantSetIds() X-Ref |
| No description |
Class: Google_Service_Genomics_SearchVariantsResponse - X-Ref
| setNextPageToken($nextPageToken) X-Ref |
| No description |
| getNextPageToken() X-Ref |
| No description |
| setVariants($variants) X-Ref |
| No description |
| getVariants() X-Ref |
| No description |
Class: Google_Service_Genomics_Status - X-Ref
| setCode($code) X-Ref |
| No description |
| getCode() X-Ref |
| No description |
| setDetails($details) X-Ref |
| No description |
| getDetails() X-Ref |
| No description |
| setMessage($message) X-Ref |
| No description |
| getMessage() X-Ref |
| No description |
Class: Google_Service_Genomics_Variant - X-Ref
| setAlternateBases($alternateBases) X-Ref |
| No description |
| getAlternateBases() X-Ref |
| No description |
| setCalls($calls) X-Ref |
| No description |
| getCalls() X-Ref |
| No description |
| setCreated($created) X-Ref |
| No description |
| getCreated() X-Ref |
| No description |
| setEnd($end) X-Ref |
| No description |
| getEnd() X-Ref |
| No description |
| setFilter($filter) X-Ref |
| No description |
| getFilter() X-Ref |
| No description |
| setId($id) X-Ref |
| No description |
| getId() X-Ref |
| No description |
| setInfo($info) X-Ref |
| No description |
| getInfo() X-Ref |
| No description |
| setNames($names) X-Ref |
| No description |
| getNames() X-Ref |
| No description |
| setQuality($quality) X-Ref |
| No description |
| getQuality() X-Ref |
| No description |
| setReferenceBases($referenceBases) X-Ref |
| No description |
| getReferenceBases() X-Ref |
| No description |
| setReferenceName($referenceName) X-Ref |
| No description |
| getReferenceName() X-Ref |
| No description |
| setStart($start) X-Ref |
| No description |
| getStart() X-Ref |
| No description |
| setVariantSetId($variantSetId) X-Ref |
| No description |
| getVariantSetId() X-Ref |
| No description |
Class: Google_Service_Genomics_VariantCall - X-Ref
| setCallSetId($callSetId) X-Ref |
| No description |
| getCallSetId() X-Ref |
| No description |
| setCallSetName($callSetName) X-Ref |
| No description |
| getCallSetName() X-Ref |
| No description |
| setGenotype($genotype) X-Ref |
| No description |
| getGenotype() X-Ref |
| No description |
| setGenotypeLikelihood($genotypeLikelihood) X-Ref |
| No description |
| getGenotypeLikelihood() X-Ref |
| No description |
| setInfo($info) X-Ref |
| No description |
| getInfo() X-Ref |
| No description |
| setPhaseset($phaseset) X-Ref |
| No description |
| getPhaseset() X-Ref |
| No description |
Class: Google_Service_Genomics_VariantInfo - X-Ref
Class: Google_Service_Genomics_VariantSet - X-Ref
| setDatasetId($datasetId) X-Ref |
| No description |
| getDatasetId() X-Ref |
| No description |
| setId($id) X-Ref |
| No description |
| getId() X-Ref |
| No description |
| setMetadata($metadata) X-Ref |
| No description |
| getMetadata() X-Ref |
| No description |
| setReferenceBounds($referenceBounds) X-Ref |
| No description |
| getReferenceBounds() X-Ref |
| No description |
Class: Google_Service_Genomics_VariantSetMetadata - X-Ref
| setDescription($description) X-Ref |
| No description |
| getDescription() X-Ref |
| No description |
| setId($id) X-Ref |
| No description |
| getId() X-Ref |
| No description |
| setInfo($info) X-Ref |
| No description |
| getInfo() X-Ref |
| No description |
| setKey($key) X-Ref |
| No description |
| getKey() X-Ref |
| No description |
| setNumber($number) X-Ref |
| No description |
| getNumber() X-Ref |
| No description |
| setType($type) X-Ref |
| No description |
| getType() X-Ref |
| No description |
| setValue($value) X-Ref |
| No description |
| getValue() X-Ref |
| No description |
